View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_46 (Length: 234)

Name: NF1780_low_46
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_46
NF1780_low_46
[»] chr5 (3 HSPs)
chr5 (2-159)||(40383217-40383374)
chr5 (86-187)||(40364946-40365045)
chr5 (6-75)||(40366033-40366102)
[»] chr7 (4 HSPs)
chr7 (6-70)||(15433308-15433372)
chr7 (1-72)||(15492143-15492214)
chr7 (6-64)||(26222541-26222599)
chr7 (9-50)||(29238037-29238078)
[»] scaffold1694 (1 HSPs)
scaffold1694 (6-70)||(298-362)
[»] chr6 (1 HSPs)
chr6 (1-38)||(5089326-5089363)
[»] chr4 (1 HSPs)
chr4 (1-50)||(11131819-11131868)
[»] chr1 (2 HSPs)
chr1 (20-73)||(4285902-4285955)
chr1 (25-73)||(9390268-9390316)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 40383374 - 40383217
Alignment:
Q  2 ttgaaaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattatgtaattttgctagag-ggcagatttttatactatagt 100  Q
    ||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||| |||||  ||||||| | |||   ||  |||||||| |||| |    
T  40383374 ttgaaaaatgacgattggacccataaaattaacaagattatgagtttaaccgaagatgattataaaattttggtggagtaccatttttttatagtatact 40383275  T
Q  101 agtaaaagtcaactcaagcaatgccgagttgttctttattcgaataacaaatccaaata 159  Q
    | || |||||||| ||| |||||| ||||||||  ||||| ||||||||||||||||||    
T  40383274 a-tagaagtcaacccaaacaatgcagagttgtttattattagaataacaaatccaaata 40383217  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 40365045 - 40364946
Alignment:
Q  86 tttttatactatagtagtaaaagtcaactcaagcaatgccgagttgttctttattcgaataacaaatccaaatatagcattaaacaattaagagttgtta 185  Q
    |||||||  |||||||||| |||||||| ||||||| |  || |||||||||||| ||||||||| |||||  ||||||||||||||| || ||||| ||    
T  40365045 tttttatcgtatagtagtagaagtcaacccaagcaaagatgacttgttctttatttgaataacaagtccaa--atagcattaaacaataaaaagttgcta 40364948  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 40366102 - 40366033
Alignment:
Q  6 aaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattatgtaattttgct 75  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||| |  ||||||||  |||||||||    
T  40366102 aaaatgacgattgaacccataaaattaaaaagattataagtttaaccgataataattataaaattttgct 40366033  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 15433372 - 15433308
Alignment:
Q  6 aaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattatgtaatt 70  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| | | |||||||||| ||||    
T  15433372 aaaatgacgaatgaacccataaaattaagaagattatgagtttaatcgacgataattatgaaatt 15433308  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15492214 - 15492143
Alignment:
Q  1 tttgaaaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattatgtaatttt 72  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||||||   || |||||||||| ||||||    
T  15492214 tttgtaaaatgacgaatgaacccataaaattaagaagattatgagtttagttaacgataattatgaaatttt 15492143  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 26222599 - 26222541
Alignment:
Q  6 aaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattat 64  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| | | |||||||||    
T  26222599 aaaatgacgattgaacccataaaattaagaagattataagtttaatcgaggataattat 26222541  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 29238078 - 29238037
Alignment:
Q  9 atgacgattgaacccataaaattaagaagaatatgagtttaa 50  Q
    |||||||||| || |||||||||||||||| |||||||||||    
T  29238078 atgacgattggacgcataaaattaagaagattatgagtttaa 29238037  T

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Target: scaffold1694 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 298 - 362
Alignment:
Q  6 aaaatgacgattgaacccataaaattaagaagaatatgagtttaaccaaagataattatgtaatt 70  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||| | | |||||||||| ||||    
T  298 aaaattacgaatgaacccataaaattaagaagattatgagtttaatcgacgataattatgaaatt 362  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5089363 - 5089326
Alignment:
Q  1 tttgaaaaatgacgattgaacccataaaattaagaaga 38  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  5089363 tttgtaaaatgacgattaaacccataaaattaagaaga 5089326  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11131868 - 11131819
Alignment:
Q  1 tttgaaaaatgacgattgaacccataaaattaagaagaatatgagtttaa 50  Q
    |||| |||||||| ||||||||||||||| |||||||| ||| |||||||    
T  11131868 tttgtaaaatgacaattgaacccataaaagtaagaagattattagtttaa 11131819  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 4285955 - 4285902
Alignment:
Q  20 acccataaaattaagaagaatatgagtttaaccaaagataattatgtaattttg 73  Q
    ||||||||||||||| ||| ||||||||| ||| ||| |||||||| |||||||    
T  4285955 acccataaaattaagtagattatgagttttaccgaagttaattatgaaattttg 4285902  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9390268 - 9390316
Alignment:
Q  25 taaaattaagaagaatatgagtttaaccaaagataattatgtaattttg 73  Q
    |||||||||||||| ||||||||||||| |  ||||||||| |||||||    
T  9390268 taaaattaagaagattatgagtttaaccgagaataattatgaaattttg 9390316  T

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