View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_49 (Length: 225)
Name: NF1780_low_49
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_49 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 31602796 - 31602581
Alignment:
| Q |
10 |
ggcgtcggcgtcggtgttatgatgtatcataacatatttcgagcccatgatttagtggaagctctgcaacctttcatagaagatgggtatatttctcccg |
109 |
Q |
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| T |
31602796 |
ggcgtcggcgtcggtgtcatgatgtatcataacatatttcgagcccatgatttagtggaagctctgcaacctttcatagaagatgggtatatttctcccg |
31602697 |
T |
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| Q |
110 |
tcatgatctattataaaatatttgtaaggatatgttattttaaattttttccgatttttgaacacacgatttggtaggagctttgcaacctttcatatag |
209 |
Q |
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| T |
31602696 |
tcatgatctattataaaatatttgtaaggatatgttattttaaattttttccgatttttgaacacacaatttggtaggagctttgcaacctttcatatag |
31602597 |
T |
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| Q |
210 |
aaggtgggtagattcc |
225 |
Q |
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| T |
31602596 |
aaggtgggtagattcc |
31602581 |
T |
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