View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1780_low_51 (Length: 220)

Name: NF1780_low_51
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1780_low_51
NF1780_low_51
[»] chr1 (8 HSPs)
chr1 (10-199)||(28043589-28043768)
chr1 (39-164)||(49938734-49938863)
chr1 (14-130)||(14576642-14576760)
chr1 (21-130)||(17603372-17603484)
chr1 (115-164)||(489257-489306)
chr1 (99-164)||(29904802-29904867)
chr1 (11-87)||(473124-473199)
chr1 (108-164)||(2295156-2295212)
[»] chr8 (3 HSPs)
chr8 (20-164)||(26771234-26771381)
chr8 (73-164)||(36963308-36963402)
chr8 (20-164)||(12976182-12976328)
[»] chr5 (3 HSPs)
chr5 (97-165)||(29815048-29815116)
chr5 (87-164)||(32862630-32862707)
chr5 (87-164)||(42500197-42500273)
[»] chr4 (2 HSPs)
chr4 (115-199)||(13126495-13126579)
chr4 (14-164)||(22030166-22030319)
[»] chr7 (4 HSPs)
chr7 (10-80)||(33266526-33266595)
chr7 (99-140)||(8960617-8960658)
chr7 (104-164)||(4970746-4970806)
chr7 (39-87)||(4970828-4970876)
[»] chr3 (2 HSPs)
chr3 (115-164)||(5436139-5436188)
chr3 (116-164)||(37795663-37795711)
[»] chr2 (2 HSPs)
chr2 (123-164)||(21828037-21828078)
chr2 (115-199)||(4606992-4607076)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 28043589 - 28043768
Alignment:
Q  10 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaaaataacttggaaaagtttttg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  28043589 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaacttaa----------aaaagtttttg 28043678  T
Q  110 aaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 199  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||    
T  28043679 aaaattgtcgtaagttgtttttagaagtttttctaaacagtcttataaaacttataatggtagataaactcgaataagttaatccaaaca 28043768  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 49938734 - 49938863
Alignment:
Q  39 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttaga 134  Q
    |||| ||||||| || ||||| |||||| |||| |||||||||||||||   |||||| ||| |||| | |||||||||||||| |||| |||||| | |    
T  49938734 tttttgtatatgttataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttcata 49938833  T
Q  135 agttcttctaaacagtcttacaaaacttat 164  Q
    |||||| | ||||| ||| |||||||||||    
T  49938834 agttctcccaaacaatctcacaaaacttat 49938863  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 14576760 - 14576642
Alignment:
Q  14 aaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactt--aaaataa-cttggaaaagtttttga 110  Q
    ||||| |||||||||||||| ||| |||| |||||||||| || || |||||| |||| ||||||||||||||  ||||||| ||   ||||| ||||||    
T  14576760 aaaggataaaataaagttaaattgttttt-gtatatgctataatttttttttataagctatattagagaactttgaaaataagctgaaaaaagcttttga 14576662  T
Q  111 aaattgtcgtaagttgtttt 130  Q
    |||||||| |||| ||||||    
T  14576661 aaattgtcataagctgtttt 14576642  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 17603484 - 17603372
Alignment:
Q  21 aaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactt---aaaataacttggaaaa-gtttttgaaaattg 116  Q
    ||||||| ||||| ||| |||| |||||||||| ||||| |||||| |||| ||||| ||||||||   ||||||| ||| |||| |||| |||||||||    
T  17603484 aaaataacgttaaattgttttt-gtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattg 17603386  T
Q  117 tcgtaagttgtttt 130  Q
    || |||| ||||||    
T  17603385 tcataagctgtttt 17603372  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 489257 - 489306
Alignment:
Q  115 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |||| ||||||||||| | ||||| |||||||||||||||||||| ||||    
T  489257 tgtcataagttgttttcataagtttttctaaacagtcttacaaaaattat 489306  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 29904802 - 29904867
Alignment:
Q  99 aaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||| |||||||||||| | |||| |||||||| |||||||   ||||||||| |||||||||||    
T  29904802 aaaagcttttgaaaattgccataagctgtttttataagttctctcaaacagtctcacaaaacttat 29904867  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 473124 - 473199
Alignment:
Q  11 agcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta 87  Q
    |||||| |||||||||||||||| ||| ||||||| ||||||| ||||| |||||| |||   |||| |||||||||    
T  473124 agcaaaaggtaaaataaagttaaattg-ttttcgtgtatgctataagttgtttttataagttctattggagaactta 473199  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 2295156 - 2295212
Alignment:
Q  108 tgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||||||||| |||| |||||| | ||||||| | ||||||||| |||||||||||    
T  2295156 tgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttat 2295212  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 26771234 - 26771381
Alignment:
Q  20 taaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttggaaaagt-ttttgaaaatt 115  Q
    ||||||||| |||| ||| |||| |||||||||| ||| | |||||| |||  |||||||||||||||   |||||| ||| |||||  |||||||||||    
T  26771234 taaaataaacttaaattgttttt-gtatatgctataagctttttttataagatatattagagaacttatgaaaataagttgaaaaaggcttttgaaaatt 26771332  T
Q  116 gtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||| |||| |||||| | ||||||| | ||||||||| |||||||||||    
T  26771333 gtcataagctgttttcataagttctcccaaacagtctcacaaaacttat 26771381  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 36963402 - 36963308
Alignment:
Q  73 atattagagaact--taaaataacttggaaaa-gtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |||||||||||||  |||||||| ||| |||| | ||||||||||||||  ||| |||||||  ||||||| | ||||||||| |||||||||||    
T  36963402 atattagagaactaataaaataagttgtaaaaagcttttgaaaattgtcaaaagctgtttttgtaagttctcccaaacagtctcacaaaacttat 36963308  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 12976182 - 12976328
Alignment:
Q  20 taaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta--aaataa-cttggaaaagtttttgaaaattg 116  Q
    |||||||||||||| ||  ||||  ||||||||| || || |||||| |||| |||||||||||||||  |||||| ||   ||||| ||||||||||||    
T  12976182 taaaataaagttaaattaattttt-tatatgctacaatttgtttttataagctatattagagaacttatgaaataagctgaaaaaagcttttgaaaattg 12976280  T
Q  117 tcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |   ||| |||| | | ||||||| ||||||||||| ||||| |||||    
T  12976281 ttagaagctgttctcataagttctactaaacagtctcacaaaccttat 12976328  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 29815116 - 29815048
Alignment:
Q  97 ggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttata 165  Q
    ||||||| |||||||||||||  |||||||||||   ||||||||||||| ||||| ||||||||||||    
T  29815116 ggaaaagcttttgaaaattgttataagttgttttcgtaagttcttctaaatagtctcacaaaacttata 29815048  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 32862707 - 32862630
Alignment:
Q  87 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |||||||  |||||||| || |||||| |||||||||||||||| | || |||||| ||||||| | |||||| ||||    
T  32862707 aaaataagctggaaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaacagtgtcacaaaatttat 32862630  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 42500273 - 42500197
Alignment:
Q  87 aaaataacttggaaaagtttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||  | |||||| || ||| ||||| |||||||||||    
T  42500273 aaaataagttgaaaaagcttatgaaaattgtcgtaagttgtttccataagttc-tccaaagagtctcacaaaacttat 42500197  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 13126579 - 13126495
Alignment:
Q  115 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 199  Q
    |||| |||| |||||||| ||||||||| ||||||||| |||||||||||  | |||||||| ||  ||||||  ||||||||||    
T  13126579 tgtcataagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaaca 13126495  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 22030166 - 22030319
Alignment:
Q  14 aaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattagagaactta---aaataacttg-gaaaagtttttg 109  Q
    ||||| |||||||||||||  ||  |||| |||||||||| ||||| || ||| |||  | |||||||||||||   ||||||| || |||||| |||||    
T  22030166 aaaggataaaataaagttatattattttt-gtatatgctataagttgttcttacaagttaaattagagaacttatgaaaataacctgagaaaagcttttg 22030264  T
Q  110 aaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||||||| |||| |||||| | ||||||| | ||| || || |||||||||||    
T  22030265 aaaattgtcataagctgttttcataagttctcccaaataggctcacaaaacttat 22030319  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 33266595 - 33266526
Alignment:
Q  10 tagcaaagggtaaaataaagttaagttgcttttcgtatatgctaaaagttctttttaaaagccatattaga 80  Q
    ||||||||| |||||||||||||| ||||||||| || || ||| |||||||||||| |||| | ||||||    
T  33266595 tagcaaaggataaaataaagttaaattgcttttc-tacatcctataagttctttttataagctacattaga 33266526  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 8960658 - 8960617
Alignment:
Q  99 aaaagtttttgaaaattgtcgtaagttgtttttagaagttct 140  Q
    ||||| |||||||||||||| ||||||||||||| |||||||    
T  8960658 aaaagcttttgaaaattgtcataagttgtttttataagttct 8960617  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 4970806 - 4970746
Alignment:
Q  104 tttttgaaaattgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||||||||||| | ||||||||||| | ||||||| | ||||||||| |||| ||||||    
T  4970806 tttttgaaaattgccataagttgttttcataagttctcccaaacagtctcacaagacttat 4970746  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 4970876 - 4970828
Alignment:
Q  39 ttttcgtatatgctaaaagttctttttaaaagccatattagagaactta 87  Q
    |||| |||||||||| |||||||||||| |||  |||||||||||||||    
T  4970876 tttttgtatatgctataagttctttttataagatatattagagaactta 4970828  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 5436139 - 5436188
Alignment:
Q  115 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |||| ||||||||||| ||||||||||| ||||||| | |||||||||||    
T  5436139 tgtcataagttgttttcagaagttcttcaaaacagtgtcacaaaacttat 5436188  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 37795663 - 37795711
Alignment:
Q  116 gtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||    
T  37795663 gtcgtaagttgttttaataagtccttccaaacagtcttacaagacttat 37795711  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 21828037 - 21828078
Alignment:
Q  123 gttgtttttagaagttcttctaaacagtcttacaaaacttat 164  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  21828037 gttgttttcaaaagttcttctaaacagtctcacaaaacttat 21828078  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 4606992 - 4607076
Alignment:
Q  115 tgtcgtaagttgtttttagaagttcttctaaacagtcttacaaaacttataatggtaggtaaacttgaataagataatccaaaca 199  Q
    |||| ||||||||||| | ||||||| | ||| ||||| |||||||||||| |||||| ||| ||  ||||||  ||||||||||    
T  4606992 tgtcataagttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

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