View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_53 (Length: 212)
Name: NF1780_low_53
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 54215126 - 54215303
Alignment:
| Q |
14 |
agcacagactatagcaagaagacttgaagtaaagagcatctcaacaatagagaaagctccaacatctacgtgaagaaataataattaatattaattagga |
113 |
Q |
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| T |
54215126 |
agcaccgactatagcaagaagacttgaagtaaagagcatctcaacaatagagaaagctccaacatctacgtgaagaaataataatta------attagga |
54215219 |
T |
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| Q |
114 |
ggtgattaattatgaattatgatgagaaaattgtattgatacctctttgataacagagttttccagtattagtatcaaatattt |
197 |
Q |
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| T |
54215220 |
ggtgattaattatgaattatgatgagaaaattgtattgatacctctttgataacagagttttccagtattagtatcaaatattt |
54215303 |
T |
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