View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_55 (Length: 202)
Name: NF1780_low_55
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_55 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 28722991 - 28723173
Alignment:
| Q |
21 |
aatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaatacatatgtaatttaaatatttt |
120 |
Q |
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| T |
28722991 |
aatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaatacatatgtaatttaaatatttt |
28723090 |
T |
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| Q |
121 |
attttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatcccatac |
202 |
Q |
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| T |
28723091 |
attttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatac |
28723173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 28730633 - 28730815
Alignment:
| Q |
21 |
aatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaatacatatgtaatttaaatatttt |
120 |
Q |
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| T |
28730633 |
aatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaatacatatgtaatttaaatatttt |
28730732 |
T |
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| Q |
121 |
attttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatcccatac |
202 |
Q |
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| T |
28730733 |
attttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatac |
28730815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 28707223 - 28707348
Alignment:
| Q |
21 |
aatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaagg--agagagaacttcaatacatatgtaatttaaatatt |
118 |
Q |
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||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
28707223 |
aatgaaaatatctaaaaatttgcaagcaatatatctagtcatgaatcttaacaacttgtaacactatagagaacttcgatacatatgtaatttaaatatt |
28707322 |
T |
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| Q |
119 |
ttatttt----ttcagtatataaatg |
140 |
Q |
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|| |||| ||||||||||||||| |
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| T |
28707323 |
tttttttttttttcagtatataaatg |
28707348 |
T |
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