View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_7 (Length: 443)
Name: NF1780_low_7
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Original strand, 7260127 - 7260539
Alignment:
| Q |
15 |
aaacataacaaacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagacctt |
114 |
Q |
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| T |
7260127 |
aaacataacaaacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagacctt |
7260226 |
T |
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| Q |
115 |
ggtcctgctggtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagcta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260227 |
ggtcctgctggtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagcta |
7260326 |
T |
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| Q |
215 |
acactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7260327 |
acactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagctactgctggtaagagaaatgctgttgc |
7260426 |
T |
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| Q |
315 |
ttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260427 |
ttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttc |
7260526 |
T |
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| Q |
415 |
cttgatcctgttc |
427 |
Q |
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||||||||||||| |
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| T |
7260527 |
cttgatcctgttc |
7260539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 7265988 - 7266052
Alignment:
| Q |
49 |
cctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagacct |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | || ||||||| |||||||| |
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| T |
7265988 |
cctgcatttgttaatcaatttccagctgttaatggtcttggtttatcagcagcaaaattagacct |
7266052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
244 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
285 |
Q |
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| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
244 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
343 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||| | | |||||||| |||| ||| ||||||| | |||||||||||| | ||||| |
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| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
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| Q |
344 |
g |
344 |
Q |
| |
|
| |
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|
| T |
7287383 |
g |
7287383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
192 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
281 |
Q |
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|||||| |||||||| || || ||||||||||| || || ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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