View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_8 (Length: 438)
Name: NF1780_low_8
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 18253827 - 18253422
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagttatatgctgaattagt |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
18253827 |
accctaatagagcagctgcatgaggaatcttcagaaactctgatagcatgtgtattagatgttttacttagtatttgggggagttatatgttgaattagt |
18253728 |
T |
|
| Q |
118 |
aactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaactgctattgagattgctcacatcaatggaatcttcagaa |
217 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18253727 |
aactactatg-ctgctattgagattgctcacatcaatggtttctcaaacttttggttggaa---ctattgagattgctcacatcaatggaatcttcagaa |
18253632 |
T |
|
| Q |
218 |
accatataacaaacttttggtctcaattataacttcnnnnnnnnnnnnngtgaaggaaaccattgaaa-ttttttattttagaaagaaaccattgaaac- |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||| |
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| T |
18253631 |
accatataacaaacttttggtctcaattataactt-------tttttttgtgaaggaaaccattgaaactttttttttttaggaagaaaccattgaaaca |
18253539 |
T |
|
| Q |
316 |
-agatactcaattatatgatgttactacatgtttgcttaaatataaaatgagaagtgcacaaacnnnnnnncaaaccaaatattaggaaaatacagcacg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
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| T |
18253538 |
tagatactcaattatatgatgttactacatgtttgcttaaatataaaatgagaagtgcacaaacaaaaaaacaaaccaaatattaggaaaatacaacatg |
18253439 |
T |
|
| Q |
415 |
tacgtttattcatctca |
431 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
18253438 |
tacgtttattcatctca |
18253422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 34661501 - 34661670
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||| ||||| || |||| ||||| |||||||||||||| ||||||| |
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| T |
34661501 |
accctaatagagcagctgcaggaggaatcttcagaaattctgatagcttatgtgttggatgctttactcagtatctgggggagcatagtgcactatatgc |
34661600 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |
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| T |
34661601 |
cgaactagtagctgctatgactgctattgagatagctcacatcgatggtttctcaaatttttggttggaa |
34661670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 1344564 - 1344395
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||| ||||||| |||||||| |||| ||||| | |||||||||||| ||||||| |
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|
| T |
1344564 |
accctaatagagcagctgtaggaggaatcttcagaaactatgatagcttatgtattggatgctttactcaatatctgggggagaaaaatgcactatatgc |
1344465 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
1344464 |
tgaattagtagctgctatgacggctattgagattgctcacatcaatggtttctcaaatttttggttggaa |
1344395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 31136450 - 31136619
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
|||| ||||||| |||| || |||||||||||||||| ||||||||| ||||| || |||| ||||| |||||||||||||| ||||||| |
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| T |
31136450 |
accccaatagagcagctacaggaggaatcttcagaaattctgatagcttatgtgttggatgctttactcagtatctgggggagcaaaatgcactatatgc |
31136549 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |
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|
| T |
31136550 |
tgaattagtagctgctatgactgctattgagatagctcacatcaatggtttctcaaatttttggttggaa |
31136619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 7578235 - 7578403
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggag---------ttatatgc |
108 |
Q |
| |
|
||||||| |||| ||||| | |||| |||||||||||||||||||||||||||||| | ||||| || | |||||||||||| ||| || |
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|
| T |
7578235 |
accctaacagagcagctgtaggaggcatcttcagaaactctgatagcatatgtattggttgtttcactaaatatctgggggagcatgatgctctatttgt |
7578334 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttgga |
177 |
Q |
| |
|
|||| | ||| ||||||||||||| ||||||||||||||| | |||||||||| || ||||||||||| |
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|
| T |
7578335 |
tgaactggtagctgctatgactgccattgagattgctcacattaatggtttctggaatttttggttgga |
7578403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 9701131 - 9701300
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggag---------ttatatgc |
108 |
Q |
| |
|
|||||||||||| |||| | |||| ||||||||||||| |||||||||||||| | | ||||| || | |||||||||||| ||| ||| |
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|
| T |
9701131 |
accctaatagagcagctataggaggcatcttcagaaactttgatagcatatgtactggttgtttcactcaatatctgggggagcatgatgctctatttgc |
9701230 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
|||| ||||| || ||||| ||| ||||||||||||||| | |||||||||| || |||||||||||| |
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|
| T |
9701231 |
tgaactagtagctattatgattgccattgagattgctcacattaatggtttcttgaatttttggttggaa |
9701300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 14722993 - 14723159
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggag---------ttatatgc |
108 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||| ||||| |||||||||||||| ||||||| |
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|
| T |
14722993 |
accctaatagagcagctgcaggaggaatcttcagaaactctgatagtttatgtgttggatgctttactcagtatctgggggagcaaaatgcactatatgc |
14723092 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttg |
175 |
Q |
| |
|
|||||||||| || |||||| |||||| ||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
14723093 |
tgaattagtagttgttatgacggctattaagattgctcacatcaatggtttctcaaatttttggttg |
14723159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 12218981 - 12218812
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatct-gggggag---------ttatatg |
107 |
Q |
| |
|
|||||||||||| ||||| | |||| |||||||||||||||||||||||||||||| | ||||| || | ||||| ||||||| ||| || |
|
|
| T |
12218981 |
accctaatagagcagctgtaggaggcatcttcagaaactctgatagcatatgtattggttgtttcactaaatatctggggggagcatgatgctctatttg |
12218882 |
T |
|
| Q |
108 |
ctgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttgga |
177 |
Q |
| |
|
||||| | ||| ||||||||||||| ||||||||||||||| | |||||||||| || ||||||||||| |
|
|
| T |
12218881 |
ctgaactggtagctgctatgactgccattgagattgctcacattaatggtttctggaatttttggttgga |
12218812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 7705427 - 7705596
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||| ||||||||| ||||| || |||| ||||| |||||||||||||| ||||||| |
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|
| T |
7705427 |
accccaatagagcagctgcaggaggaatcttcagaaattctgatagcttatgtgttggatgctttactcagtatctgggggagcaaaatgcaatatatgc |
7705526 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||| |||||| ||||||||||||| || |||| ||||||| |
|
|
| T |
7705527 |
taaattagtagctgctatgtctgctattgagatagctcacatcaatggtttctctaatttttagttggaa |
7705596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 48920580 - 48920749
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||| ||||| |||||||| ||||| || |||| ||||| |||||||||||||| ||||||| |
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|
| T |
48920580 |
accccaatagagcagctgcaggaggaatctttagaaattctgatagattatgtgttggatgctttactcagtatctgggggagcataatgcactatatgc |
48920679 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
||| ||||| ||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
48920680 |
cgaactagtagctgctatgactgctattgaaataactcacatcaatggtttctcaaatttttggttggaa |
48920749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 55468544 - 55468713
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggagt---------tatatgc |
108 |
Q |
| |
|
||||||| |||| ||||| | |||| |||||||||||||| |||| |||||||||| | ||||| || || |||||||||||| ||| ||| |
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|
| T |
55468544 |
accctaacagagcagctgtaggaggcatcttcagaaactcagatatcatatgtattggttgtttcacttaatatctgggggagcatgatgctctatttgc |
55468643 |
T |
|
| Q |
109 |
tgaattagtaactgctatgactgctattgagattgctcacgtcaatggtttctcaaacttttggttggaa |
178 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||| | |||||||||| || |||||||||||| |
|
|
| T |
55468644 |
tgaactagtagctgctatgactgccattgagattgctcacattaatggtttcttgaatttttggttggaa |
55468713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 27189694 - 27189776
Alignment:
| Q |
18 |
accctaatagagtagctgcatgaggaatcttcagaaactctgatagcatatgtattagatgttttacctagtatctgggggag |
100 |
Q |
| |
|
|||||||||||| |||| | |||| ||||||||||||| |||||||||||||| | | ||||| || | |||||||||||| |
|
|
| T |
27189694 |
accctaatagagcagctataggaggcatcttcagaaactttgatagcatatgtactggttgtttcactcaatatctgggggag |
27189776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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