View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1780_low_9 (Length: 431)
Name: NF1780_low_9
Description: NF1780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1780_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 37820997 - 37821399
Alignment:
| Q |
13 |
atacttaggtacatgagtttatttagcattattagcaaatgcaaatagctaccaactagcaccaacgtcaaaaaagaggatcggtaatattaggttgcag |
112 |
Q |
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| T |
37820997 |
atacttaggtacatgagtttatttagcattattagcaaatgtaaatagctaccaactagcaccaacgtcaaaaaagaggatgggtaatattaggttgcag |
37821096 |
T |
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| Q |
113 |
tcacattaattatttagtggagaaattaggtgaacatatgtatgaatctagaatatggatacacaacgaaaaggaacccgatgcaaagggagcattacat |
212 |
Q |
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| T |
37821097 |
tcacattaattatttagtggagaaattaggtgaacatatgtatgaatctagaatatggatacacaacgaaaaggaacccgatgcaaagggagcattacat |
37821196 |
T |
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| Q |
213 |
cccttgaattgaagttctacattaatttcaaccaattgttcctgaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtgg |
312 |
Q |
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| T |
37821197 |
cccttgaattgaagttctacattaatttcaaccaattgttcctgaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtgg |
37821296 |
T |
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| Q |
313 |
aatgcccactaagtggacttttatatacgagtactacggaagaaattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaaca |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37821297 |
aatggccactaagtggacttttatatacgagtactacggaagaaattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaaca |
37821396 |
T |
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| Q |
413 |
tat |
415 |
Q |
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| T |
37821397 |
tat |
37821399 |
T |
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