View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_11 (Length: 515)
Name: NF17811_high_11
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 14736080 - 14735574
Alignment:
| Q |
1 |
gtatacaaatacattacctgacaaatatattaagcatcgtttcctttcgagttttagtacaccatctaatgagcacacagaacgcaaggtagtacggtgg |
100 |
Q |
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| T |
14736080 |
gtatacagatacattacctgacaaatatattaagcatcgtttccgttcgagttttagtacaccaactaatgagcacacagaatgcaaggtagtacggtgg |
14735981 |
T |
|
| Q |
101 |
atggcttacctcatgaagtatctctaaatgtagtcacgaaacattcctttatctagttgaatttttctcttccttatatcctaataccctttttgaacat |
200 |
Q |
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| T |
14735980 |
atggcttacctcatgaagtatctctatatgtagtcacgaaacattcctttatctagttgaatttttatcttccttatatcctaataccctttttgaacat |
14735881 |
T |
|
| Q |
201 |
acttccttagaatacataatttcctttgtgaaagacattactctaaacgttactctagagaacgggtcttcccatacattaagggttagcatactaccca |
300 |
Q |
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| T |
14735880 |
acttccttagaatacataatttcctttgtgaaagacattactctaaacattactctagagaacgggtcttcccatacattaagggttagcatactaccca |
14735781 |
T |
|
| Q |
301 |
cacataccgtatacataatcatgctctcaaatattatgcttcacttaataacgccaatacttacttgttgattttccttaaagtaannnnnnnaacacta |
400 |
Q |
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| T |
14735780 |
cacataccatatacataatcatgctctcaaatattatgcttcgcttaataacgccaatacttacttgttgattttccttaaagtaatttttgtaacacta |
14735681 |
T |
|
| Q |
401 |
gcatatgggtcactggtattgagggttacatattataagaaaatacagcaaaactgggccccagactgcactacagaactacggaacaagtcgacatcac |
500 |
Q |
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| T |
14735680 |
gcatatgggtcactggtattgagggttacatattataagaaaatacagcaaaactgggccccggactgcactacagaactacggaacgagtcgacaacac |
14735581 |
T |
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| Q |
501 |
aactgtg |
507 |
Q |
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| T |
14735580 |
aactgtg |
14735574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 15597290 - 15597220
Alignment:
| Q |
3 |
atacaaatacattacctgacaaatatattaagcatcgtttcctttcgagttttagtacaccatctaatgag |
73 |
Q |
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||||||||| ||||| ||||||||| || |||||| ||||| | ||||| ||||||||||| |||||||| |
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| T |
15597290 |
atacaaatatattacttgacaaatacataaagcatggtttctctccgagtgttagtacaccacctaatgag |
15597220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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