View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_high_13 (Length: 468)
Name: NF17811_high_13
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Complemental strand, 32966359 - 32965935
Alignment:
| Q |
13 |
tcatcagtgtggtgaaaaacagaatgcatgacaggaataatgcccatctctttagtaaaatgtgtgatgccaagtaagctttttagttgttgtagagaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966359 |
tcatcagtgtggtgaaaaacagaatgcatgacaggaataatgcccatctctttagtaaaatgtgtgatgccaagtaagctttttagttgttgtagagaca |
32966260 |
T |
|
| Q |
113 |
caattatggcagctccagccataaacccaattaaggttgccttagatagaaaatcaatgataaatcctagcctgtataattcaatcattttgtatcaaac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32966259 |
caattatggcagctccagccataaacccaattaaggttgccttagatagaaaatcaatgataaatcctagcctgtataattcaatcattttgtatcacac |
32966160 |
T |
|
| Q |
213 |
tttatttaaatttaaaagtaaaacaaaatgctatgagaataaatgagtgatattaccttagaattccaagagctgcttgaaaaataccagcaaaacatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966159 |
tttatttaaatttaaaagtaaaacaa---------------aatgagtgatattaccttagaattccaagagctgcttgaaaaataccagcaaaacatgt |
32966075 |
T |
|
| Q |
313 |
tgaagtaaaagctaactgaacaaaaagaccagattctgttgtgggagatacttcctctgcaagcatggatcctaatacaagagaagcaatagaaacaggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966074 |
tgaagtaaaagctaactgaacaaaaagaccagattctgttgtgggagatacttcctctgcaagcatggatcctaatacaagagaagcaatagaaacaggt |
32965975 |
T |
|
| Q |
413 |
cccactgctaaatctcttgagcttccaagaacaacataaa |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32965974 |
cccactgctaaatctcttgagcttccaagaacaacataaa |
32965935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 453
Target Start/End: Complemental strand, 32954864 - 32954675
Alignment:
| Q |
264 |
attaccttagaattccaagagctgcttgaaaaataccagcaaaacatgttgaagtaaaagctaactgaacaaaaagaccagattctgttgtgggagatac |
363 |
Q |
| |
|
|||||||||||||||| || | |||||||| | |||||||||| | |||||||||| ||||| |||| ||| ||| ||| ||||| || ||||| || |
|
|
| T |
32954864 |
attaccttagaattcctagtgaagcttgaaatagaccagcaaaaaaggttgaagtaagagctagttgaagaaacagaacaggttctgctgaaggagacac |
32954765 |
T |
|
| Q |
364 |
ttcctctgcaagcatggatcctaatacaagagaagcaatagaaacaggtcccactgctaaatctcttgagcttccaagaacaacataaat |
453 |
Q |
| |
|
||| | | |||||| |||||||| ||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||| ||||||| |
|
|
| T |
32954764 |
ttcttgtctaagcatagatcctaaaacaagtgaagcaatagaaacaggtcctactgctagatcccttgaacttccaagaacagcataaat |
32954675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 32955072 - 32954956
Alignment:
| Q |
70 |
aaatgtgtgatgccaagtaagctttttagttgttgtagagacacaattatggcagctccagccataaacccaattaaggttgccttagatagaaaatcaa |
169 |
Q |
| |
|
||||||||||| ||||||| ||| || |||||||| | |||||||||||| |||||||||||||| || ||||||||| |||| || |||| |||||||| |
|
|
| T |
32955072 |
aaatgtgtgattccaagtaggctcttaagttgttgcaaagacacaattatagcagctccagccatgaatccaattaagattgctttggataaaaaatcaa |
32954973 |
T |
|
| Q |
170 |
tgataaatcctagcctg |
186 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32954972 |
tgataaatcctagcctg |
32954956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 3174231 - 3174138
Alignment:
| Q |
97 |
agttgttgtagagacacaattatggcagctccagccataaacccaattaaggttgccttagatagaaaatcaatgataaatcctagcctgtata |
190 |
Q |
| |
|
||||||||||| |||||||| || || || |||||||| || || | || |||||||| |||||||||||||| | ||| |||| |||||||| |
|
|
| T |
3174231 |
agttgttgtagtgacacaatgattgctgcaccagccatgaaacctaccaatgttgcctttgatagaaaatcaatcacaaagcctaacctgtata |
3174138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 46482629 - 46482571
Alignment:
| Q |
264 |
attaccttagaattccaagagctgcttgaaaaataccagcaaaacatgttgaagtaaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||| | || ||||||||||| |
|
|
| T |
46482629 |
attaccttagaattccaagagctgcttgaaagagatcagcagagaattttgaagtaaaa |
46482571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University