View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_14 (Length: 467)
Name: NF17811_high_14
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_14 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 16445202 - 16445647
Alignment:
| Q |
17 |
agaataaacaaaacactttacaatcaattgatatcgagaatagttccttaaagattaaacaaaaaat-gtttaaaagagaagaacctcttagcaaatgtg |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16445202 |
agaataaacaaaacacttcacaatcaattgatatcgagaatagttccttaaagattaaacaaaaaatagtttaaaagagaagaacctcttagcaaatgtg |
16445301 |
T |
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| Q |
116 |
agggtatgatcatatgatggcggtctcgttcaacatatcagaccggtacttcctgttcgcaagatattcacatgaaataacaagtgtattagccactaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
16445302 |
agggtatgatcatatgatggcggtctcgttcaacatatcagactggtacttcctgttcgcaagatattaagatgaaataacaagtgtattagccactaac |
16445401 |
T |
|
| Q |
216 |
tattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaagaaaaataaatcatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16445402 |
tattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaagaaaaataaatcatc |
16445501 |
T |
|
| Q |
316 |
tatgcagacattgattttgataaatagaggtgcagaacaaattacaatggtaggctaattgagtaaatggtgaaaagtatatttctaaatccataattag |
415 |
Q |
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| T |
16445502 |
tatgcagacattgattttgataaatagaggtgcagaacaaattacaatggtgggctaattgagtaaatggtgaaaagtatatttctaaatccat-attgg |
16445600 |
T |
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| Q |
416 |
tttcaaagtcaatgtccaaacatgcaccagattaattctgtgctcct |
462 |
Q |
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| T |
16445601 |
tttcaaagtcaatgtccaaacatgcaccagattaattctgtgatcct |
16445647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 13616110 - 13616021
Alignment:
| Q |
211 |
ctaactattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaa |
300 |
Q |
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| T |
13616110 |
ctaactatttggtaacgtttgctcaagaaattcactattcactcttctaatttcaaagtactttaaataattacaaccgtaaatcgaaaa |
13616021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 20506035 - 20506124
Alignment:
| Q |
211 |
ctaactattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaa |
300 |
Q |
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| T |
20506035 |
ctaactatttggtaacgtttgctcaagaaattcactattcactcttctaatttcaaagtactttaaataattacaaccgtaaatcaaaaa |
20506124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 13557096 - 13557044
Alignment:
| Q |
247 |
attcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaa |
299 |
Q |
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| T |
13557096 |
attcactcttttaatttcgaagtacttcaaataattgcaactgtaaatcgaaa |
13557044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 15891824 - 15891874
Alignment:
| Q |
250 |
cactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaa |
300 |
Q |
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| T |
15891824 |
cactcttttaatttcgaagtacttaaatcaattgcaaccgtaaatcgaaaa |
15891874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 15893046 - 15893096
Alignment:
| Q |
401 |
taaatccataattagtttcaaagtcaatgtccaaacatgcaccagattaat |
451 |
Q |
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| T |
15893046 |
taaatccataattaattttaaagtcatcgtccaaacatgcaccaaattaat |
15893096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 22270196 - 22270290
Alignment:
| Q |
206 |
agccactaactattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaa |
300 |
Q |
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|||||||||||||| ||||| | |||| ||| ||||| | |||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| |
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| T |
22270196 |
agccactaactatttggtaacgtttgctcaaaaaattcactattcactcttttaatttcgaagcacttaaaacaattgcaaccgtaaatcgaaaa |
22270290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 22270550 - 22270600
Alignment:
| Q |
401 |
taaatccataattagtttcaaagtcaatgtccaaacatgcaccagattaat |
451 |
Q |
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| T |
22270550 |
taaatccataactaatttcaaagtcactgtccaaacatgcaacaaattaat |
22270600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 23986 - 24075
Alignment:
| Q |
211 |
ctaactattcggtaatggttgcgcaagtaattcgcaattcactcttttaatttcaaagtacttaaaataattgcaaccataaatcgaaaa |
300 |
Q |
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| T |
23986 |
ctaactatttggtaacgtttgctcaagaaattcactattcactcttctaatttcaaagtactttaaataattacaactgaaaatcgaaaa |
24075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 38048398 - 38048448
Alignment:
| Q |
401 |
taaatccataattagtttcaaagtcaatgtccaaacatgcaccagattaat |
451 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
38048398 |
taaatccataattaatttcaaagtcaccgtccaaacatgcaccaaattaat |
38048448 |
T |
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