View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_high_15 (Length: 463)
Name: NF17811_high_15
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_15 |
 | |
|
| [»] scaffold0485 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0485 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 6958 - 7134
Alignment:
| Q |
270 |
aatcatcaatgagaggatgaagatgaagatgttgttgacttgatataaacaagcacaaagcttcggagacttttgattctatcctccataggttgcgctt |
369 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
6958 |
aatcatcaatgagagcatgaagatgaagatgttgttgacttgatataaacaagcacaaagcttcggagacgcttgattctatcctccataggttggactt |
7057 |
T |
|
| Q |
370 |
ccatttcaacgttgagagcctccattttccttttgatagacgaaagagtcgccaaatcattattcaatacaataact |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7058 |
ccatttcaacgttgagagcctccattttccctttgatagacgaaagagtcgccaaatcattattcaatacaataact |
7134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 6771 - 6893
Alignment:
| Q |
83 |
caaagaagcatatactagttcaataactcacagttacttgcaaccacatttctgaacacaaacaatggcatcaagtatttcacttatttttactccaata |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
6771 |
caaagaagcatatactagttcaataactcaccattatttgcaaccacatttctgaacactaacaatgacatcaaatagttcacttatttttactccaata |
6870 |
T |
|
| Q |
183 |
ttccttcattgtaatgtctgatt |
205 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
6871 |
ttccttcattgtaatgtcagatt |
6893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 19914864 - 19914897
Alignment:
| Q |
81 |
gtcaaagaagcatatactagttcaataactcaca |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
19914864 |
gtcaaagaaggatatactagttcaataactcaca |
19914897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 19937421 - 19937461
Alignment:
| Q |
35 |
aaaatattaacgtgcaattcacaataaaatttagtaagaat |
75 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
19937421 |
aaaatattaacgtgcagttcacaataaaattcagcaagaat |
19937461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University