View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_16 (Length: 459)
Name: NF17811_high_16
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 7656568 - 7656495
Alignment:
| Q |
372 |
ttcacctcagaaacaacatggtgatcttctttgtcactaccaccaccgcatgtgattaaccttaaacaagaact |
445 |
Q |
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| T |
7656568 |
ttcacctcagaaacaacatggtgatcttctttatcactaccaccaccgcatgtgattaaccttaaacaagaact |
7656495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 7656847 - 7656789
Alignment:
| Q |
97 |
catgaattttcctattcaatgttatccaaacagcaccttataagtattcaattatgaac |
155 |
Q |
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| T |
7656847 |
catgaattttcctattcaatgttatccaaacagcaccttataagtattcaattatgaac |
7656789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 7656704 - 7656654
Alignment:
| Q |
240 |
catcataacaagaaaagaaacgaagttggttgcatgaaacatcctcggatc |
290 |
Q |
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| T |
7656704 |
catcataacaagaaaagaaacgaagttggttgcatgaaacatcctcggatc |
7656654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 7656936 - 7656888
Alignment:
| Q |
10 |
catcatcaactacatgatatccattactaatcttgagatcaaagatcac |
58 |
Q |
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| T |
7656936 |
catcatcaactacatgatattcattactaatcttgagatcaaagatcac |
7656888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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