View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_19 (Length: 411)
Name: NF17811_high_19
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 7027548 - 7027920
Alignment:
| Q |
16 |
gagcatgattaaatggtccaaatgtcaataagtattatatgactgcaggaaaacatgcaccaaaccaattatgatgaggttctggtattctacctcttgc |
115 |
Q |
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| T |
7027548 |
gagcatgattaaatggtccaaatgtcaataagtattatatgactgcaggaaaacatgcaccaaaccaattatgatgaggttctggtattctacctcttgc |
7027647 |
T |
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| Q |
116 |
ttcatagcactatggacttcacctttagggctttgtttattccttgatttagcacattcagtgacgtagcccatatcctaaaaacaattcaaacaaagac |
215 |
Q |
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| T |
7027648 |
ttcatagtactatggacttcacctttagggctttgtttattccttgatttagcacattcagtgacgtagcccatatcctaaaaccaattcaaacaaagac |
7027747 |
T |
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| Q |
216 |
ttgaggcaaattaaaattgttgtgtgtgggggactataaggaatgattaccaatatggaccattaatgtcccaacattatggttgggactaataacatca |
315 |
Q |
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| T |
7027748 |
ttgaggcaaattaaaattgttgtgtgtgggggactataaggaatgattaccaatatggaccattaatgtcccaacattatggttgggactaataacatca |
7027847 |
T |
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| Q |
316 |
atcatatacctttgagaaaggtaacaaggaaaaaggtcaactatctgttcatccatttcataacaaacttttg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7027848 |
atcatatacctttgagaaaggtaacaaggaaaaaggtcaactatctgttcatccatttcataacaaacttttg |
7027920 |
T |
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