View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_26 (Length: 360)
Name: NF17811_high_26
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_26 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 2612 - 2390
Alignment:
| Q |
21 |
acaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacat |
120 |
Q |
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|||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||| | |
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| T |
2612 |
acaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcacaccaacacgt |
2513 |
T |
|
| Q |
121 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacagaaggcagcacccaccaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
2512 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgcccctaacagaaggcagcacccaccaaa |
2413 |
T |
|
| Q |
221 |
acagcaaacagaacctgcaaaca |
243 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
2412 |
acagcaaacagaacctgcgaaca |
2390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 9214 - 8992
Alignment:
| Q |
21 |
acaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacat |
120 |
Q |
| |
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|||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||| | |
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| T |
9214 |
acaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcacaccaacacgt |
9115 |
T |
|
| Q |
121 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacagaaggcagcacccaccaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
9114 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgcccctaacagaaggcagcacccaccaaa |
9015 |
T |
|
| Q |
221 |
acagcaaacagaacctgcaaaca |
243 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
9014 |
acagcaaacagaacctgcgaaca |
8992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 17060636 - 17060414
Alignment:
| Q |
21 |
acaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacat |
120 |
Q |
| |
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|||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||||||| ||||| |||||| ||| ||||| ||||||||||| | |
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| T |
17060636 |
acaaagacccaaaa-ctatccggaaaggcagccagacaagaacaatgaccccctatgcataacaccgcaccaaaccaagcccccaaccacaccaacacgt |
17060538 |
T |
|
| Q |
121 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccg-cctctgacagaaggcagcacccaccaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || || ||||||||||||||||||||| |
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| T |
17060537 |
gctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgccccctaacagaaggcagcacccaccaa |
17060438 |
T |
|
| Q |
220 |
aacagcaaacagaacctgcaaaca |
243 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
17060437 |
aacagcaaacagaacctgcgaaca |
17060414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 48224104 - 48223871
Alignment:
| Q |
21 |
acaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacat |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |
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| T |
48224104 |
acaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctacgcataacgccgcaccaaacccagcccccaagcacaccaacacgt |
48224005 |
T |
|
| Q |
121 |
gctgaaccgcaccacagaagctgctggcagcagc--------aaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacagaaggcagcac |
212 |
Q |
| |
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|||||||||||||||||||||||||| || || | ||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||||| |
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| T |
48224004 |
gctgaaccgcaccacagaagctgctgacaacaacaacaaaaaaaacaccagctgacagcaggtgcacatagcagcagccgcccttaacagaaggcagcac |
48223905 |
T |
|
| Q |
213 |
ccaccaaaacagcaaacagaacctgcaaacaaca |
246 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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| T |
48223904 |
ccaccaaaacagcaaacagaacctgcgaacaaca |
48223871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 48223847 - 48223792
Alignment:
| Q |
288 |
aaagccagtccaccagaaaaacaccccaaacacaactaccgaatgcaacattctctc |
344 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
48223847 |
aaagccagtccaccagaaaa-caccccaaacacaactacaaaatgcaacattctctc |
48223792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 36428032 - 36427944
Alignment:
| Q |
68 |
accccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacagaagctgctggcagcagcaa |
156 |
Q |
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|||||||||||||| | |||||||||||||| | ||||| |||||||| || | || ||||| ||||| |||||||||||||||||| |
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| T |
36428032 |
accccctacgcataccaccgcatcaaacccaacccccaaacacaccaaagcacacagacccgcaacacagcagctgctggcagcagcaa |
36427944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 49571555 - 49571424
Alignment:
| Q |
64 |
aatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacaga-agctgctggcagcagcaaacaccg |
162 |
Q |
| |
|
|||| ||||||||||||| || |||||||| ||||| ||| ||||| ||| | || ||||||| ||||||| ||||||||||||| || |||||| |
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| T |
49571555 |
aatggccccctacgcatacagctgcatcaaaaccagcccccttgcacaacaaaccgcgcagaaccgcgccacagatagctgctggcagctgctaacacca |
49571456 |
T |
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| Q |
163 |
actgacagcaggtgcacacagcagcaaccgcc |
194 |
Q |
| |
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|||||||||||| ||| | |||| |||||||| |
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| T |
49571455 |
actgacagcaggagcaaatagcaccaaccgcc |
49571424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 36616105 - 36616151
Alignment:
| Q |
72 |
cctacgcataacgccgcatcaaacccagcacccaagcacaccaacac |
118 |
Q |
| |
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|||||||||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
36616105 |
cctacgcataccgccgcatcaaccccagcccccaagcacaccaacac |
36616151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 5357188 - 5357132
Alignment:
| Q |
138 |
aagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcc |
194 |
Q |
| |
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|||||||||||||| || |||||| |||||||||||| ||| | |||| |||||||| |
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|
| T |
5357188 |
aagctgctggcagctgctaacaccaactgacagcaggagcaaatagcaccaaccgcc |
5357132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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