View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_27 (Length: 358)
Name: NF17811_high_27
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 34063430 - 34063111
Alignment:
| Q |
20 |
agtctaataacctttagaatgtaggaatcgaataaatcttcaatattgcttactccttaagtaagcgggaaatatcttagagcccttcaaataagtgata |
119 |
Q |
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| T |
34063430 |
agtctaataacctttagaatgtaggaaccgaataaatcttcaatattgcttactccttaagtaagcggtaaatatcttagagccccttaagtaagtgata |
34063331 |
T |
|
| Q |
120 |
acgagttcaattcatgattcttgcgtatnnnnnnnnntcgattgaagaagagtattcaccttgtttgtctaccaattcaacagagattagctattattnn |
219 |
Q |
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| T |
34063330 |
acgagttcaattcatgatttttgcgtatagaaaaaattcgattggagaagagtattcaccttatttgtctaccaattcaacatagattagctattattaa |
34063231 |
T |
|
| Q |
220 |
nnnnncagtggtgaaagttttgtacctataacaaggtaaaaatagaaagatataataaactcctaaaatcaacgataagaataaatgcaatcctccacta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34063230 |
aaaaacagtggtgaaagttttgtacctataacaaggtaaaaatagaaagatataataaactcctaaaaacaacgataagaataaatgcaatcctccacta |
34063131 |
T |
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| Q |
320 |
ggcagatggtaatcatcaca |
339 |
Q |
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|||||||||||||||||||| |
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| T |
34063130 |
ggcagatggtaatcatcaca |
34063111 |
T |
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