View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_33 (Length: 311)
Name: NF17811_high_33
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 8438183 - 8437873
Alignment:
| Q |
1 |
agaactctgtaaaagagaaaaggttgataaagtaccacacttcactttctacaagagcaaagaaaaaattcatgaagaagaagctattggtccagatatg |
100 |
Q |
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| T |
8438183 |
agaactctgtaaaagagaaaaggttgataaagtaccacacttcactttctacaagagcaaagaaaaaattcatgaagaagaagctattggtccagatatg |
8438084 |
T |
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| Q |
101 |
cttgttggtgatgtgttatactacggtgataaccattcaggtgtagtgcaacttcacaacagagaagatgttgagaaacttattgaggatcataagattg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438083 |
cttgttggtgatgttttatactacggtgataaccattcaggtgtagtgcaacttcacaacagagaagatgttgagaaacttattgaggatcataagattg |
8437984 |
T |
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| Q |
201 |
atcataagcttattgttcttgatgttggtcttaaacattgtgggccatgtgttaaggtttatccgacagtgattaagttgtcgagacaaatgaatgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437983 |
atcataagcttattgttcttgatgttggtcttaaacattgtgggccatgtgttaaggtttatccgacagtgattaagttgtcgagacaaatgaatgatac |
8437884 |
T |
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| Q |
301 |
tgttatttttg |
311 |
Q |
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||||||||||| |
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| T |
8437883 |
tgttatttttg |
8437873 |
T |
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