View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_high_37 (Length: 286)
Name: NF17811_high_37
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 36502430 - 36502159
Alignment:
| Q |
1 |
agtttctgtgcatgtctatgcatattcgatttcccatataacgtaatcaaacgtgccgagaaaccctcatttgatatatcagcgtaactcttctgatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36502430 |
agtttctgtgcatgtctatgcatattcgatttcccatataacgtaatcaaacgtgccgagaaaccctcatttgatatatcagcgtaactcttctgatgct |
36502331 |
T |
|
| Q |
101 |
cgataatgtcgcggacccaccggaagcgtttagctccggcgaggcggcggacggtgtcttcatagatgccgnnnnnnnnacggaaacgatcaatgtctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36502330 |
cgataatgtcgcggacccaccggaagcgtttagctccggcgaggcggcggacggtgtcttcatagatgccgttttttttacggaaacgatcaatgtctga |
36502231 |
T |
|
| Q |
201 |
agcttttttgaatttttcaacgagtgttttgagattttgttcttggtataggtcttgtgaaatggatttgat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36502230 |
agcttttttgaatttttcaacgagtgttttgagattttgttctttgtataggtcttgtgaaatggatttgat |
36502159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University