View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_39 (Length: 282)
Name: NF17811_high_39
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 5652411 - 5652664
Alignment:
| Q |
17 |
acattatcgaaagcatgtggagtaactgggtccatatcaactgcaacccttggatccacattccttgggcacattgattttaactgtgctgcgtatttta |
116 |
Q |
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| T |
5652411 |
acattatcgaaagcatgtggagtaactgggtccatatcaactgcaacccttggatccacattccttgggcacattgattttaactgtgctgcgtatttta |
5652510 |
T |
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| Q |
117 |
agtctaatgtagggtctactcgactcattgtcttgaaattatacactctattggtgaatttgttgcaatgtgagaatccaacagtgtgagcacctacaga |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5652511 |
agtctaatgtagggtctactcgactcgttgtcttgaaattatacactctattggtgaatttgttgcaatgtgagaatccaacagtgtgagcacctacaga |
5652610 |
T |
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| Q |
217 |
gggaatgaatcatgtcaatcaacacaaggatccaaagttttatttattaatttt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5652611 |
gggaatgaatcatgtcaatcaacacaaggatccaaagttttatttattaatttt |
5652664 |
T |
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