View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_high_45 (Length: 267)
Name: NF17811_high_45
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_high_45 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 5525869 - 5525996
Alignment:
| Q |
116 |
tttgtacggagttctcttttgcttgttgttatgatttttaatgaaaaatgtttcacatttgttacggtgatagtgtctttcaagtttcaggtatgctaag |
215 |
Q |
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| T |
5525869 |
tttgtacggagttctcttttgcttgttgttatgctttttaatgaacaatgtttcacatttgttatggtgatagagtctttcaagtttcaggtatgctaag |
5525968 |
T |
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| Q |
216 |
gaggttccatttggttcacaagaagtat |
243 |
Q |
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| T |
5525969 |
gaggttccatttggttcacaagaagtat |
5525996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 5525717 - 5525819
Alignment:
| Q |
15 |
atgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaatttggttacaagactttattattagtgactaggttaac |
114 |
Q |
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| T |
5525717 |
atgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaatttggttacaagactttattatttgtga-taggttaac |
5525815 |
T |
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| Q |
115 |
cttt |
118 |
Q |
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|||| |
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| T |
5525816 |
cttt |
5525819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 267
Target Start/End: Original strand, 48223632 - 48223783
Alignment:
| Q |
116 |
tttgtacggagttctcttttgcttgttgttatgatttttaatgaaaaatgtttcacatttgttacggtgatagtgtctttcaagtttcaggtatgctaag |
215 |
Q |
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| T |
48223632 |
tttgtacatagttctcctttgcttgttgttctgttttttaatgaaaaatgtttcacatttgttttggtgataatgtctttcaagtttcaggtatgctaag |
48223731 |
T |
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| Q |
216 |
gaggttccatttggttcacaagaagtatctgtgtctgctgtttgaatggatt |
267 |
Q |
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| T |
48223732 |
gaggttccatttggtttacaagaagtacttgtgtctgctgtttgaacggatt |
48223783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 23657132 - 23657017
Alignment:
| Q |
123 |
ggagttctcttttgcttgttgttatgatttttaatgaaaaatg--tttcacatttgttacggtgatagtgtctttcaagtttcaggt-atgctaaggagg |
219 |
Q |
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|||||| ||| || |||| ||||||| ||||||||||| | | |||||||||||||| | ||||||||||||||||||||||||| ||||||||||| |
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| T |
23657132 |
ggagttatctcttccttgatgttatgctttttaatgaacgaggggtttcacatttgttatgatgatagtgtctttcaagtttcaggtgatgctaaggaga |
23657033 |
T |
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| Q |
220 |
ttccatttggttcaca |
235 |
Q |
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| T |
23657032 |
ttctatttggttcaca |
23657017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 30005583 - 30005645
Alignment:
| Q |
15 |
atgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaat |
77 |
Q |
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| T |
30005583 |
atgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaat |
30005645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 45203426 - 45203488
Alignment:
| Q |
15 |
atgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaat |
77 |
Q |
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| T |
45203426 |
atgagaagactgaggcatccaaatgttgttctcttcatgggagctataactagacctccaaat |
45203488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 43262207 - 43262165
Alignment:
| Q |
76 |
atttggttacaagactttattattagtgactaggttaaccttt |
118 |
Q |
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| T |
43262207 |
atttggttacaagactttattattagagactaggttaatcttt |
43262165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 36229201 - 36229243
Alignment:
| Q |
76 |
atttggttacaagactttattattagtgactaggttaaccttt |
118 |
Q |
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| T |
36229201 |
atttcgttacatgactttattattagagactaggttaaccttt |
36229243 |
T |
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