View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17811_high_5 (Length: 636)

Name: NF17811_high_5
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17811_high_5
NF17811_high_5
[»] chr8 (14 HSPs)
chr8 (145-404)||(5662583-5662842)
chr8 (411-602)||(5657560-5657751)
chr8 (281-421)||(27541539-27541679)
chr8 (281-421)||(14678001-14678142)
chr8 (281-421)||(5657771-5657912)
chr8 (281-421)||(31100852-31100993)
chr8 (363-423)||(24788096-24788156)
chr8 (15-72)||(5662913-5662970)
chr8 (278-422)||(8158460-8158604)
chr8 (363-421)||(23738657-23738715)
chr8 (367-423)||(24787162-24787220)
chr8 (483-566)||(5718911-5718991)
chr8 (480-566)||(5686767-5686850)
chr8 (368-426)||(33689362-33689420)
[»] chr2 (7 HSPs)
chr2 (268-420)||(24454516-24454668)
chr2 (281-422)||(23348960-23349102)
chr2 (281-421)||(10328871-10329013)
chr2 (281-421)||(18355293-18355434)
chr2 (281-398)||(12741711-12741829)
chr2 (283-359)||(997882-997958)
chr2 (285-334)||(1615899-1615948)
[»] chr5 (8 HSPs)
chr5 (256-415)||(22004412-22004571)
chr5 (281-421)||(22009508-22009649)
chr5 (281-422)||(9043801-9043943)
chr5 (281-421)||(7473469-7473610)
chr5 (281-420)||(30442527-30442667)
chr5 (363-421)||(19085440-19085498)
chr5 (257-421)||(30463006-30463172)
chr5 (363-398)||(26841027-26841062)
[»] scaffold0096 (1 HSPs)
scaffold0096 (262-423)||(27408-27569)
[»] chr3 (19 HSPs)
chr3 (297-414)||(47763911-47764028)
chr3 (256-422)||(24761853-24762020)
chr3 (281-421)||(2549937-2550077)
chr3 (257-421)||(24815915-24816080)
chr3 (145-256)||(31688029-31688140)
chr3 (281-422)||(31685076-31685218)
chr3 (145-256)||(31896727-31896838)
chr3 (145-256)||(31912436-31912547)
chr3 (283-421)||(17681767-17681905)
chr3 (262-421)||(12538597-12538756)
chr3 (145-256)||(31946084-31946195)
chr3 (281-421)||(53973266-53973407)
chr3 (281-423)||(37982347-37982490)
chr3 (256-421)||(53352716-53352882)
chr3 (281-414)||(19882091-19882225)
chr3 (262-421)||(53027713-53027873)
chr3 (322-374)||(53351956-53352008)
chr3 (15-44)||(52131183-52131212)
chr3 (389-421)||(38612019-38612051)
[»] scaffold0003 (2 HSPs)
scaffold0003 (149-256)||(36796-36903)
scaffold0003 (145-256)||(42974-43087)
[»] chr7 (6 HSPs)
chr7 (281-425)||(1262084-1262229)
chr7 (281-421)||(43071362-43071503)
chr7 (281-422)||(26909961-26910103)
chr7 (281-422)||(48849787-48849929)
chr7 (15-68)||(11649352-11649405)
chr7 (145-193)||(11649475-11649523)
[»] scaffold0035 (1 HSPs)
scaffold0035 (281-429)||(35055-35204)
[»] scaffold0045 (1 HSPs)
scaffold0045 (281-421)||(11614-11755)
[»] chr4 (5 HSPs)
chr4 (281-421)||(29863341-29863482)
chr4 (346-422)||(12506435-12506511)
chr4 (346-423)||(38014347-38014415)
chr4 (363-398)||(24260243-24260278)
chr4 (389-418)||(10195656-10195685)
[»] chr6 (8 HSPs)
chr6 (281-414)||(33045411-33045545)
chr6 (312-422)||(3065697-3065807)
chr6 (145-256)||(27444274-27444387)
chr6 (293-421)||(10092512-10092641)
chr6 (255-414)||(8976411-8976571)
chr6 (363-423)||(16246700-16246760)
chr6 (363-420)||(4660238-4660295)
chr6 (367-414)||(30908436-30908483)
[»] scaffold0596 (1 HSPs)
scaffold0596 (281-421)||(654-795)
[»] scaffold0157 (1 HSPs)
scaffold0157 (346-422)||(13966-14042)
[»] chr1 (4 HSPs)
chr1 (257-423)||(25223217-25223385)
chr1 (190-256)||(7608113-7608179)
chr1 (363-417)||(50990911-50990965)
chr1 (190-256)||(31771101-31771167)
[»] scaffold0475 (1 HSPs)
scaffold0475 (363-398)||(7536-7571)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 145 - 404
Target Start/End: Complemental strand, 5662842 - 5662583
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5662842 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttga 5662743  T
Q  245 atttgaattgtggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662742 atttgaattgtggcatggggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg 5662643  T
Q  345 attggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattagga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5662642 attggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatattaattagga 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 411 - 602
Target Start/End: Complemental strand, 5657751 - 5657560
Alignment:
Q  411 ataagtatgatttcataataaggaaatttttgtcatgcttaattagtgataaagtgaatgaaagttaacctagctcaccaacattttcatatttaacaaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5657751 ataagtatgatttcataataaggaaatttttgtcatgcttaattagtgataaagtgaatgaaaattaacctagctcaccaacattttcatatttaacaaa 5657652  T
Q  511 atatggattttttatttatattggaaaataaagtattatataaaacgaggaggaaacataaagcgagtacaaggagtacttaagtcctcctt 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5657651 atatggattttttatttatattggaaaataaagtattatataaaacaaggaggaaacataaagcgagtacaaggagtacttaagtcctcctt 5657560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 27541539 - 27541679
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaa 380  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    ||||| |||| ||| ||   || ||||||||||||||||||    
T  27541539 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgtttggagccaaagccatttaggtttagggtttgcaa 27541638  T
Q  381 agtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  27541639 agtcattagcaatgttaacaaagattagatataagtatgat 27541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 14678001 - 14678142
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||| ||    
T  14678001 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttca 14678100  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  14678101 aagtcattagcaatgttaacaaagattagatataagtatgat 14678142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 421
Target Start/End: Complemental strand, 5657912 - 5657771
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  5657912 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgca 5657813  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||||||||||||| |||||  | |||||||||||||||||||    
T  5657812 aagtcattagcaacgttaacaaagattagatataagtatgat 5657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 31100852 - 31100993
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||  |||| || ||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||| ||||||    
T  31100852 tcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgca 31100951  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  31100952 aagtcattagcaatgttaacaaagattagatataagtatgat 31100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 24788096 - 24788156
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24788096 taggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgattt 24788156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 5662970 - 5662913
Alignment:
Q  15 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcg 72  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5662970 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcg 5662913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 8158604 - 8158460
Alignment:
Q  278 aagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttg 377  Q
    ||||||||||| ||||||||||||||||||||  |||| |  | ||  |||| ||||| ||| ||| ||||||||| |||| |  |||||||||| ||||    
T  8158604 aagtcagattagatcaaaggatgagatgaatgattagctagctcatttgatcaaacggccctgcttaattggcgcccaaaatacttaggtttaggttttg 8158505  T
Q  378 caaagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    ||| || ||||||| ||||||  |  |||||||||||||||||||    
T  8158504 caaggtaattagcattgttaacaaaaattagatataagtatgatt 8158460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 23738715 - 23738657
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  23738715 tagggttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 23738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 24787162 - 24787220
Alignment:
Q  367 tttagggtttgcaaagtcattagcaatgttaat--taggattagatataagtatgattt 423  Q
    |||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  24787162 tttaggatttgcaaagtcattagcaatgttaattataagattagatataagtatgattt 24787220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 566
Target Start/End: Complemental strand, 5718991 - 5718911
Alignment:
Q  483 gctcaccaacattttcatatttaacaaaatatggattttttatttatattggaaaataaagtattatataaaacgaggaggaaa 566  Q
    |||||||||||||||||||||| | ||||||||||| |||| |  |    ||||||||||||||||||||||| ||||||||||    
T  5718991 gctcaccaacattttcatattttaaaaaatatggatattttttgaag---ggaaaataaagtattatataaaatgaggaggaaa 5718911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 566
Target Start/End: Complemental strand, 5686850 - 5686767
Alignment:
Q  480 ctagctcaccaacattttcatatttaacaaaatatggattttttatttatattggaaaataaagtattatataaaacgaggaggaaa 566  Q
    |||||||||||| |||||||||||||| |||||||||||  |   |||  |  ||||||||||||||||||||||| ||||||||||    
T  5686850 ctagctcaccaagattttcatatttaaaaaaatatggatact---ttttgaagggaaaataaagtattatataaaatgaggaggaaa 5686767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 33689362 - 33689420
Alignment:
Q  368 ttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgatttcat 426  Q
    ||||||| |||||||||||||||||||||||  | ||||||||||| ||||||| ||||    
T  33689362 ttagggtctgcaaagtcattagcaatgttaacaaagattagatataggtatgatatcat 33689420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 268 - 420
Target Start/End: Complemental strand, 24454668 - 24454516
Alignment:
Q  268 tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggt 367  Q
    |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  24454668 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaatttaggt 24454569  T
Q  368 ttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatga 420  Q
    ||||| ||||||| |   |||||||||||||||| ||||||||||||||||||    
T  24454568 ttaggatttgcaatggtcttagcaatgttaattaagattagatataagtatga 24454516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 281 - 422
Target Start/End: Original strand, 23348960 - 23349102
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  23348960 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 23349059  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |  ||||||||||||||||  | ||||||||||||||||||||    
T  23349060 atttcattagcaatgttaacaaagattagatataagtatgatt 23349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 10328871 - 10329013
Alignment:
Q  281 tcagattaaatcaaa-ggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattg-gcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||| |||||||||| |||| |||||||||||||||||| ||||| |  ||||| ||  |  || ||| ||| ||||||||||||||||    
T  10328871 tcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgc 10328970  T
Q  379 aaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||  ||||||||||||||||  | |||||||||||||||||||    
T  10328971 aatttcattagcaatgttaacaaagattagatataagtatgat 10329013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 18355293 - 18355434
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctcc-ttgatt-ggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| |||| |||||| ||| || || ||| |||  || ||||||||||||||||    
T  18355293 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacg-acctcccttgttttggagccaaaaccatttaggtttagggtttgc 18355391  T
Q  379 aaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||  ||||||||||||||||  | ||||| |||||||||||||    
T  18355392 aatttcattagcaatgttaacaaagattaaatataagtatgat 18355434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 12741829 - 12741711
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctcctt--gattggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |||||||    |||| ||| |||  || ||||||||||||||||    
T  12741829 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg-cctcctttgttttggagccaaaaccatttaggtttagggtttgc 12741731  T
Q  379 aaagtcattagcaatgttaa 398  Q
    ||  ||||||||||||||||    
T  12741730 aatttcattagcaatgttaa 12741711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 997958 - 997882
Alignment:
Q  283 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 359  Q
    |||||| || |||||||||||||||||| ||| || |||||  |||| ||||| | ||||| |||||||||||||||    
T  997958 agattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 1615899 - 1615948
Alignment:
Q  285 attaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacg 334  Q
    |||| |||||||||||||||| |||| ||||||||||||| |||| ||||    
T  1615899 attagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacg 1615948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 256 - 415
Target Start/End: Original strand, 22004412 - 22004571
Alignment:
Q  256 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 355  Q
    ||||||||||||||||| || ||||| | |||| |||||||||||| ||||||||  ||||||||||||||||| |||||||| ||||||||||||||||    
T  22004412 ggcatggggaaatgaaactttgaagtgacattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgccta 22004511  T
Q  356 aaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataag 415  Q
    ||  |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||    
T  22004512 aactatctaggtttagggtttgcaaaatcattagcaatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 22009508 - 22009649
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  22009508 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 22009607  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    || ||||||||||||||||  | |||||||||||||||||||    
T  22009608 aattcattagcaatgttaacaaagattagatataagtatgat 22009649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 9043943 - 9043801
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  9043943 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 9043844  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |  ||||||||||||||||  | ||||||||||||||||||||    
T  9043843 atttcattagcaatgttaacaaagattagatataagtatgatt 9043801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 7473469 - 7473610
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  7473469 tcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 7473568  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |  ||||||||||||||||  | |||||||||||||||||||    
T  7473569 atttcattagcaatgttaacaaagattagatataagtatgat 7473610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 30442527 - 30442667
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  30442527 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 30442626  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatga 420  Q
    |  ||||||||||||||||  | ||||||||||||| ||||    
T  30442627 atttcattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 19085440 - 19085498
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  19085440 taggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat 19085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 421
Target Start/End: Original strand, 30463006 - 30463172
Alignment:
Q  257 gcatggggaaa-tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 355  Q
    ||||||||||| |||||||   |||||| || | ||||||||||||||||||||| |||| |  | ||  |||| |||||  |||||| ||||||||| |    
T  30463006 gcatggggaaactgaaagtgccaagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgccca 30463105  T
Q  356 aaaaatctaggtttagggttt-gcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||   ||||||||||||||| |||| || ||||||| ||||||  | |||||||||||||||||||    
T  30463106 aaatggctaggtttagggttttgcaaggtaattagcattgttaacaaagattagatataagtatgat 30463172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 26841027 - 26841062
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaa 398  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26841027 taggtttagggtttgcaaaatcattagcaatgttaa 26841062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 262 - 423
Target Start/End: Complemental strand, 27569 - 27408
Alignment:
Q  262 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 361  Q
    |||||||||||||| ||||||| |||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  27569 gggaaatgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 27470  T
Q  362 ctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
     ||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||||||    
T  27469 ttaggtttagggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgattt 27408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 47763911 - 47764028
Alignment:
Q  297 gatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgtt 396  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||    
T  47763911 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgtt 47764010  T
Q  397 aattaggattagatataa 414  Q
    || |||||||||||||||    
T  47764011 aagtaggattagatataa 47764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 256 - 422
Target Start/End: Original strand, 24761853 - 24762020
Alignment:
Q  256 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcct 354  Q
    ||||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| ||||| |  | ||| || || |||     
T  24761853 ggcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagcca 24761952  T
Q  355 aaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |||  || ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24761953 aaaccatttaggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgatt 24762020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 421
Target Start/End: Complemental strand, 2550077 - 2549937
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  2550077 tcagattaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgca 2549979  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  2549978 aagtcattagcaatgttaattaagattagatataagtatgat 2549937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 257 - 421
Target Start/End: Complemental strand, 24816080 - 24815915
Alignment:
Q  257 gcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgccta 355  Q
    |||||||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| ||||| |  | | | || || ||| |    
T  24816080 gcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaa 24815981  T
Q  356 aaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||  || ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  24815980 aaccatttaggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 24815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 31688140 - 31688029
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 244  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31688140 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaattatttgtcatttacaatgcaccgtaaacttga 31688041  T
Q  245 atttgaattgtg 256  Q
    ||||||||||||    
T  31688040 atttgaattgtg 31688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 31685218 - 31685076
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt--ggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||  ||||| ||||| | |||  || ||| |||  || ||||||||||||||||    
T  31685218 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacgg-cctcccttattttggagccaaaaccatttaggtttagggtttgc 31685120  T
Q  379 aaagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  31685119 aaagtcattagcaatgttaataaagattagatataagtatgatt 31685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 31896727 - 31896838
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 244  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31896727 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttga 31896826  T
Q  245 atttgaattgtg 256  Q
    ||||||||||||    
T  31896827 atttgaattgtg 31896838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 31912436 - 31912547
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 244  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| ||||||||||||||||||| |||||||| |    
T  31912436 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgcacagtaaacttga 31912535  T
Q  245 atttgaattgtg 256  Q
    ||||||||||||    
T  31912536 atttgaattgtg 31912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 283 - 421
Target Start/End: Complemental strand, 17681905 - 17681767
Alignment:
Q  283 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaag 382  Q
    |||||| |||||||||||||||| |||| || ||||||||||||||| ||||| || ||||| |||| ||| |||  || |||||||||||||||||||     
T  17681905 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttggagccaaaaccatttaggtttagggtttgcaaaa 17681806  T
Q  383 tcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||||| |||||||||  | |||||||||||||||||||    
T  17681805 tcattaacaatgttaacaaagattagatataagtatgat 17681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 262 - 421
Target Start/End: Original strand, 12538597 - 12538756
Alignment:
Q  262 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 361  Q
    ||||| |||||||| ||||| | |||| ||||||||||| |||| |||| |||||||||||||||||| ||||| |  ||||| |||| ||| |||  ||    
T  12538597 gggaattgaaagtttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgtttggagccaaaaccat 12538696  T
Q  362 ctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
     ||||||||||||||||||| ||||||| || |||||  | |||||||||||||||||||    
T  12538697 ttaggtttagggtttgcaaaatcattagaaaggttaacaaagattagatataagtatgat 12538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 31946084 - 31946195
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttta 244  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||| ||| ||||||||||||||||||| |||||||| |    
T  31946084 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattcattatttgtcatttacaatgcacagtaaacttga 31946183  T
Q  245 atttgaattgtg 256  Q
    ||||||||||||    
T  31946184 atttgaattgtg 31946195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 53973266 - 53973407
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| | || |||||||||||||||||| ||||| |  |||||||| || ||| |||  || |||||||||||||||||    
T  53973266 tcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgca 53973365  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |  ||||||||||||||||  | |||||||||||||||||||    
T  53973366 atttcattagcaatgttaacaaagattagatataagtatgat 53973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 37982490 - 37982347
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| || ||||||||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||||||||||||    
T  37982490 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgca 37982391  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
    |  ||||||||||||||||  | |||||||||||||||||||||    
T  37982390 atttcattagcaatgttaacaaagattagatataagtatgattt 37982347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 256 - 421
Target Start/End: Original strand, 53352716 - 53352882
Alignment:
Q  256 ggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcct 354  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||||||||| |  |  ||||||||||||||||| ||||| |  | | | || || |||     
T  53352716 ggcatgaggaaataaaagtttgaagtcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagcca 53352815  T
Q  355 aaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||   | ||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  53352816 aaaccgtttaggtttagagtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 53352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 281 - 414
Target Start/End: Original strand, 19882091 - 19882225
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||| ||    
T  19882091 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttaca 19882190  T
Q  380 aagtcattagcaatgttaattaggattagatataa 414  Q
    |  ||||||||||||||||  | ||||||||||||    
T  19882191 atttcattagcaatgttaacaaagattagatataa 19882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 262 - 421
Target Start/End: Original strand, 53027713 - 53027873
Alignment:
Q  262 gggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacgg---acctccttgattggcgcctaaaa 358  Q
    ||||||| |||||| ||||||| |||| |||||||||||||||| ||||  ||||||||||||||||| |||||    | || ||  |||| | | |||     
T  53027713 gggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcatt--ttggagtcaaaac 53027810  T
Q  359 aatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
     || ||||||||||||||| ||||| ||||||| ||||||  |||||||||||||||||||||    
T  53027811 catttaggtttagggtttgtaaagttattagcagtgttaagaaggattagatataagtatgat 53027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 53351956 - 53352008
Alignment:
Q  322 atgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggt 374  Q
    |||||||| |||||||| ||||||||||||||||||  |||||||||||||||    
T  53351956 atgagatccaacggaccaccttgattggcgcctaaactatctaggtttagggt 53352008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 52131212 - 52131183
Alignment:
Q  15 gagaggaagaagtggaagaatcacgattta 44  Q
    ||||||||||||||||||||||||||||||    
T  52131212 gagaggaagaagtggaagaatcacgattta 52131183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 38612019 - 38612051
Alignment:
Q  389 gcaatgttaattaggattagatataagtatgat 421  Q
    ||||||||||||||||||||| |||||||||||    
T  38612019 gcaatgttaattaggattagaaataagtatgat 38612051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 36796 - 36903
Alignment:
Q  149 gtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaattt 248  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||| |||||    
T  36796 gtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataacattaattatttgtcatttacaatgcactgtaaacttgaattt 36895  T
Q  249 gaattgtg 256  Q
    ||||||||    
T  36896 gaattgtg 36903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 42974 - 43087
Alignment:
Q  145 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtc-atttacaatgcacggtaaactt 242  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||| | |||||| ||||||||||||| ||||||||    
T  42974 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaactt 43073  T
Q  243 taatttgaattgtg 256  Q
     |||||||||||||    
T  43074 gaatttgaattgtg 43087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 281 - 425
Target Start/End: Complemental strand, 1262229 - 1262084
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||||    ||||| || || ||| |||  || |||||||||||||||||    
T  1262229 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgca 1262130  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgatttca 425  Q
    |||||||||||||||||||  | |||||||||||||||||||||||    
T  1262129 aagtcattagcaatgttaacaaagattagatataagtatgatttca 1262084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 43071362 - 43071503
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| |  |||||  |||| ||| |||  || |||||||||||||||||    
T  43071362 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgca 43071461  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |  ||||||||||||||||  | |||||||||||||||||||    
T  43071462 atttcattagcaatgttaacaaagattagatataagtatgat 43071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 281 - 422
Target Start/End: Original strand, 26909961 - 26910103
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||| ||||| || || |  ||||| || || ||| ||   || |||||||||||||||||    
T  26909961 tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgca 26910060  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |||| ||||||||||||||  | ||||||||||||||||||||    
T  26910061 aagttattagcaatgttaacaaagattagatataagtatgatt 26910103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 281 - 422
Target Start/End: Original strand, 48849787 - 48849929
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||  |   ||||| || || ||| |||  || |||||||||| ||| ||    
T  48849787 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttaggtttaggatttaca 48849886  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |||||||||||||||||||  | ||||||||||||||||||||    
T  48849887 aagtcattagcaatgttaacaaagattagatataagtatgatt 48849929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 11649352 - 11649405
Alignment:
Q  15 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtg 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11649352 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg 11649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 11649475 - 11649523
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtatt 193  Q
    |||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  11649475 ttaggtcaaagccatggtttccaatgagatggatatgcaacattgtatt 11649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 429
Target Start/End: Complemental strand, 35204 - 35055
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctcc-ttgatt-ggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| |||  |||||| ||| || || ||| |||  || ||||||||||||||||    
T  35204 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaaca-acctcccttgttttggagccaaaaccatttaggtttagggtttgc 35106  T
Q  379 aaagtcattagcaatgttaattaggattagatataagtatgatttcataat 429  Q
    ||||||||||||||||||||  | |||||||||||||||||||| ||||||    
T  35105 aaagtcattagcaatgttaacaaagattagatataagtatgattgcataat 35055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 11614 - 11755
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||| ||||| |  ||||| || || | | |||  |  |||||||||||||||||    
T  11614 tcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgca 11713  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  11714 aagtcattagcaatgttaacaaagattagatataagtatgat 11755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 29863341 - 29863482
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgca 379  Q
    |||||||| |||||||||||||||| ||||  ||||||||||||||||| ||||| |  ||||| || || ||| |||  || |||||||| ||||||||    
T  29863341 tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgca 29863440  T
Q  380 aagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||||||| |||||||||||  | |||||||||||||||||||    
T  29863441 aagtcatgagcaatgttaacaaagattagatataagtatgat 29863482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 12506511 - 12506435
Alignment:
Q  346 ttggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |||||||| |||  || |||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||    
T  12506511 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 12506435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 346 - 423
Target Start/End: Complemental strand, 38014415 - 38014347
Alignment:
Q  346 ttggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||        ||||||||||||||||||||||||    
T  38014415 ttggcgcctaaaaa-tctaggtttaggttttgtaaagtcattagca--------taggattagatataagtatgattt 38014347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 398
Target Start/End: Complemental strand, 24260278 - 24260243
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaa 398  Q
    |||| |||||||||||||||||||||||||||||||    
T  24260278 tagggttagggtttgcaaagtcattagcaatgttaa 24260243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 418
Target Start/End: Complemental strand, 10195685 - 10195656
Alignment:
Q  389 gcaatgttaattaggattagatataagtat 418  Q
    ||||||||||||||||||||||||||||||    
T  10195685 gcaatgttaattaggattagatataagtat 10195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 281 - 414
Target Start/End: Original strand, 33045411 - 33045545
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt--ggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||| ||||| ||||| | |||  || ||| |||  || ||||||||||||||||    
T  33045411 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg-cctcccttattttggagccaaaaccatttaggtttagggtttgc 33045509  T
Q  379 aaagtcattagcaatgttaattaggattagatataa 414  Q
    ||||||||||||||||||||  | ||||||||||||    
T  33045510 aaagtcattagcaatgttaacaaagattagatataa 33045545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 3065807 - 3065697
Alignment:
Q  312 tagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagata 411  Q
    |||||||||||||||||| ||||| |  ||||| |||| ||| |||  || |||||||||||||||||||||||||||| |||||||  | |||||||||    
T  3065807 tagccaaatgatgagatccaacggtctcccttgtttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagata 3065708  T
Q  412 taagtatgatt 422  Q
    |||||||||||    
T  3065707 taagtatgatt 3065697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 27444387 - 27444274
Alignment:
Q  145 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtca-tttacaatgcacggtaaactt 242  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||| | ||||||| |||||||||||| ||||||||    
T  27444387 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaactatttgtcaatttacaatgcaccgtaaactt 27444288  T
Q  243 taatttgaattgtg 256  Q
     |||||||||||||    
T  27444287 gaatttgaattgtg 27444274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 10092641 - 10092512
Alignment:
Q  293 aaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgatt-ggcgcctaaaaaatctaggtttagggtttgcaaagtcattagca 391  Q
    |||| |||||||| |||| |||||||||||||||||| ||||| |  ||||| || || ||| |||  || ||| |||||||||||||||||||||| ||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaaca 10092542  T
Q  392 atgttaattaggattagatataagtatgat 421  Q
    |||||||  | |||||||||||||||||||    
T  10092541 atgttaacaaagattagatataagtatgat 10092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 255 - 414
Target Start/End: Complemental strand, 8976571 - 8976411
Alignment:
Q  255 tggcatggggaaatgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctcctt-gattggcgcc 353  Q
    ||||||||||||||||||||  |   |||||||| |||||||||||||||| |||  |||| |||| |||||||| ||||| |  ||||   |||| |||    
T  8976571 tggcatggggaaatgaaagtctgcgatcagattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagcc 8976472  T
Q  354 taaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataa 414  Q
     |||  || ||||||||| ||||| ||||||||||||||| ||||  | ||||||||||||    
T  8976471 aaaaccatttaggtttagagtttgtaaagtcattagcaatattaacaaagattagatataa 8976411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 16246760 - 16246700
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
    |||| ||||||||||||||||||||||||||||| |  | |||||||||||||||||||||    
T  16246760 taggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgattt 16246700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 4660238 - 4660295
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatga 420  Q
    |||| |||||||||||||||||||||||||||||||  | ||||| ||||||||||||    
T  4660238 tagggttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 414
Target Start/End: Original strand, 30908436 - 30908483
Alignment:
Q  367 tttagggtttgcaaagtcattagcaatgttaattaggattagatataa 414  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  30908436 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataa 30908483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 281 - 421
Target Start/End: Complemental strand, 795 - 654
Alignment:
Q  281 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttga--ttggcgcctaaaaaatctaggtttagggtttgc 378  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||| ||||| | |  |||| | | |||  || ||||||||||||||||    
T  795 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg-cctcccttattttggagtcaaaaccatttaggtttagggtttgc 697  T
Q  379 aaagtcattagcaatgttaattaggattagatataagtatgat 421  Q
    ||  ||||||||||||||||  | ||| |||||||||||||||    
T  696 aatttcattagcaatgttaacaaagatcagatataagtatgat 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 13966 - 14042
Alignment:
Q  346 ttggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagtatgatt 422  Q
    |||||||| |||  || |||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||    
T  13966 ttggcgcccaaattatttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgatt 14042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 423
Target Start/End: Complemental strand, 25223385 - 25223217
Alignment:
Q  257 gcatggggaaa-tgaaagttagaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 355  Q
    ||||||||||| |||||||   |||||| || | ||||||||||||||||||||| |||| |  | ||  |||| |||||  |||||| ||||||||| |    
T  25223385 gcatggggaaactgaaagtgccaagtcaaatgagatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgccca 25223286  T
Q  356 aaaaatctaggtttagggttt-gcaaagtcattagcaatgttaattaggattagatataagtatgattt 423  Q
    |||   |||| |||||||||| |||| || ||||||| ||||||  | |||||||||||||||||||||    
T  25223285 aaatggctagctttagggttttgcaaggtaattagcattgttaacaaagattagatataagtatgattt 25223217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 7608113 - 7608179
Alignment:
Q  190 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 256  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||    
T  7608113 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaacttgaacttgaattgtg 7608179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 50990965 - 50990911
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaattaggattagatataagta 417  Q
    ||||||||||||||||||||| || |||||||||||  | |||||||||||||||    
T  50990965 taggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta 50990911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 31771101 - 31771167
Alignment:
Q  190 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 256  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||    
T  31771101 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaatttgaacttgaattgtg 31771167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 7536 - 7571
Alignment:
Q  363 taggtttagggtttgcaaagtcattagcaatgttaa 398  Q
    |||| |||||||||||||||||||||||||||||||    
T  7536 tagggttagggtttgcaaagtcattagcaatgttaa 7571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University