View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17811_high_58 (Length: 238)

Name: NF17811_high_58
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17811_high_58
NF17811_high_58
[»] chr8 (2 HSPs)
chr8 (1-221)||(16340129-16340347)
chr8 (32-143)||(40381594-40381706)
[»] chr5 (4 HSPs)
chr5 (32-146)||(15810711-15810826)
chr5 (32-146)||(15726866-15726981)
chr5 (63-146)||(29368486-29368567)
chr5 (66-146)||(22399433-22399511)
[»] chr3 (2 HSPs)
chr3 (63-146)||(54393338-54393419)
chr3 (63-146)||(21984355-21984436)
[»] chr1 (3 HSPs)
chr1 (63-140)||(30294098-30294173)
chr1 (99-145)||(1282222-1282268)
chr1 (99-145)||(1283253-1283299)
[»] chr4 (2 HSPs)
chr4 (63-119)||(47552076-47552130)
chr4 (33-95)||(46732652-46732716)
[»] chr6 (2 HSPs)
chr6 (63-146)||(6822524-6822605)
chr6 (32-87)||(33106820-33106878)
[»] scaffold0245 (1 HSPs)
scaffold0245 (99-145)||(7902-7948)
[»] scaffold0229 (1 HSPs)
scaffold0229 (99-145)||(8230-8276)
[»] chr7 (2 HSPs)
chr7 (33-89)||(33338291-33338348)
chr7 (63-95)||(11618483-11618515)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16340347 - 16340129
Alignment:
Q  1 caaccaactgaactaagctcatgaagacatgatgattgtttagttatttatacagagttatatttt-attgatattgaaaataagaaaatcattcacaga 99  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||     
T  16340347 caaccaactgaactaagctcacgaggacaa-atgattgtttagttatttatacagagatatttttttattgatattgaaaataagaaaatcattcacag- 16340250  T
Q  100 gtttccgtaatatgaataattgcagaagactattattaatgctacaannnnnnnctatagtgcctccattgttcaaaaatcttggatccgtaggtgactg 199  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| ||||||||    
T  16340249 -tttccgtaatatgaataattgtagaagactattattaatgctacaatttttttttatagtgcctccattgttcaaaaatcttggatccgtcggtgactg 16340151  T
Q  200 tgatccacccatgccctaaagg 221  Q
    ||||||||||||||||||||||    
T  16340150 tgatccacccatgccctaaagg 16340129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 40381706 - 40381594
Alignment:
Q  32 atgattgtttagttatttatacagagttatat---tttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaaga 128  Q
    ||||||||||||||||||||| ||||  ||||   |||||||||||||||||| |||||||| ||  || ||||||  |||||| || ||| | ||||||    
T  40381706 atgattgtttagttatttatatagagaaatatatttttattgatattgaaaatgagaaaatcttt--caaagtttctataatataaaaaatcgtagaaga 40381609  T
Q  129 ctattattaatgcta 143  Q
    | |||||||||||||    
T  40381608 caattattaatgcta 40381594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 15810826 - 15810711
Alignment:
Q  32 atgattgtttagttatttatacagagttatat---tttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaaga 128  Q
    ||||||||||||||||||||| ||||  ||||   ||||||||| || |||||||||||| | |||| ||  ||||||||||||||| ||||| ||| ||    
T  15810826 atgattgtttagttatttatatagagaaatatatttttattgattttcaaaataagaaaaccgttcaaag--tttccgtaatatgaaaaattgtagagga 15810729  T
Q  129 ctattattaatgctacaa 146  Q
    | ||||||||||||||||    
T  15810728 caattattaatgctacaa 15810711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 15726981 - 15726866
Alignment:
Q  32 atgattgtttagttatttatacagagttatat---tttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaaga 128  Q
    ||||||||||||||||||||| | ||  ||||   ||||||||| || |||||||||||| |||||| ||  ||||| ||||||||| ||||  ||| ||    
T  15726981 atgattgtttagttatttatataaagaaatatatttttattgattttcaaaataagaaaaccattcaaag--tttccataatatgaaaaattatagagga 15726884  T
Q  129 ctattattaatgctacaa 146  Q
    | ||||||||||||||||    
T  15726883 caattattaatgctacaa 15726866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 29368567 - 29368486
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatgctacaa 146  Q
    ||||||||||||||||||| |||||| ||||  || ||||||  ||||||||| ||||  ||| ||| ||||||||||||||||    
T  29368567 ttttattgatattgaaaatgagaaaaccatt--caaagtttcaataatatgaaaaattctagaggacaattattaatgctacaa 29368486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 22399433 - 22399511
Alignment:
Q  66 tattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatgctacaa 146  Q
    |||||||||||||||| |||||||||||   | ||||||| ||||||||||||||  | | ||| |||| |||||||||||    
T  22399433 tattgatattgaaaatgagaaaatcatt--taaagtttccataatatgaataattctataggacaattactaatgctacaa 22399511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 54393338 - 54393419
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatgctacaa 146  Q
    ||||||||||||||||||| |||||||||||  || ||||||| ||||||||||||| | ||| ||| ||| ||||||||||||    
T  54393338 ttttattgatattgaaaatgagaaaatcatt--caaagtttccataatatgaataatcgtagaggacaatttttaatgctacaa 54393419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 21984355 - 21984436
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatgctacaa 146  Q
    ||||||||||||||||||| |||||| ||||  || ||||||  ||||||||| ||||  ||| ||| ||||||||||||||||    
T  21984355 ttttattgatattgaaaatgagaaaaccatt--caaagtttcaataatatgaaaaattctagaggacaattattaatgctacaa 21984436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 30294173 - 30294098
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatg 140  Q
    |||||||||| || |||||||||||| ||||  || ||||||| ||||||||| ||||| ||||||| ||||||||||    
T  30294173 ttttattgattttcaaaataagaaaaccatt--caaagtttccataatatgaaaaattgtagaagacaattattaatg 30294098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 1282268 - 1282222
Alignment:
Q  99 agtttccgtaatatgaataattgcagaagactattattaatgctaca 145  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  1282268 agtttccataatatgaataattgtagatgacaattattaatgctaca 1282222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 1283299 - 1283253
Alignment:
Q  99 agtttccgtaatatgaataattgcagaagactattattaatgctaca 145  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  1283299 agtttccataatatgaataattgtagatgacaattattaatgctaca 1283253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 47552076 - 47552130
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataat 119  Q
    ||||||||||||||||||| |||||||||||  || ||||||| |||||||||||||    
T  47552076 ttttattgatattgaaaatgagaaaatcatt--caaagtttccataatatgaataat 47552130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 46732716 - 46732652
Alignment:
Q  33 tgattgtttagttatttatacaga--gttatattttattgatattgaaaataagaaaatcattca 95  Q
    |||||||||| ||||||||| |||  |  |||||||||||||||||||||| |||||| ||||||    
T  46732716 tgattgtttaattatttatatagaaagagatattttattgatattgaaaatgagaaaaacattca 46732652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 6822605 - 6822524
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattcacagagtttccgtaatatgaataattgcagaagactattattaatgctacaa 146  Q
    ||||||||||||||||||| |  |||||||||| ||  ||||| ||||||||| ||||| | | ||| ||||||||||||||||    
T  6822605 ttttattgatattgaaaatgaacaaatcattcaaag--tttccataatatgaaaaattgtaaaggacaattattaatgctacaa 6822524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 33106820 - 33106878
Alignment:
Q  32 atgattgtttagttatttatacagagttata---ttttattgatattgaaaataagaaa 87  Q
    ||||||||||||||||||||| ||||  |||   ||||||||||||||||||| |||||    
T  33106820 atgattgtttagttatttatatagagaaatatatttttattgatattgaaaatgagaaa 33106878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 7948 - 7902
Alignment:
Q  99 agtttccgtaatatgaataattgcagaagactattattaatgctaca 145  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  7948 agtttccataatatgaataattgtagatgacaattattaatgctaca 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 8276 - 8230
Alignment:
Q  99 agtttccgtaatatgaataattgcagaagactattattaatgctaca 145  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||||    
T  8276 agtttccataatatgaataattgtagatgacaattattaatgctaca 8230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 33338291 - 33338348
Alignment:
Q  33 tgattgtttagttatttatacagagttatatttt-attgatattgaaaataagaaaat 89  Q
    |||||||||| ||||||||| ||| | ||||||| ||||||||||||||| |||||||    
T  33338291 tgattgtttaattatttatatagaataatatttttattgatattgaaaatgagaaaat 33338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 11618515 - 11618483
Alignment:
Q  63 ttttattgatattgaaaataagaaaatcattca 95  Q
    ||||||||||||||||||| |||||||||||||    
T  11618515 ttttattgatattgaaaattagaaaatcattca 11618483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University