View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_low_10 (Length: 531)
Name: NF17811_low_10
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 31 - 516
Target Start/End: Complemental strand, 37749259 - 37748767
Alignment:
| Q |
31 |
atgtgcatgttctatcagtggcatcagagcctctggttcgtgatccacggggtttcaaggatagcttccgcaaagagaatgcaattcattatcaactaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37749259 |
atgtgcatgttctatcagtggcatcagagcctctggttcatgatccatggggtttcaaggatagattccgcaaagagaatgcaattcactatcaactaaa |
37749160 |
T |
|
| Q |
131 |
caacaaggcagatgtggtaatggttgatgcatatgagattggcacttggttattgata-------tgtcaataatggcttttgaaaaggagttttctcat |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37749159 |
caacaaggcagatgtggtaatggtttatgcatatgagattggcacttggttattaatacatgtggtgtcaataatggcttttgaaaaggagttttctcaa |
37749060 |
T |
|
| Q |
224 |
gtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaagaggaagaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37749059 |
gtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaagaggaagag- |
37748961 |
T |
|
| Q |
324 |
aggcttcctgcgagaaatccatgaaaggagatnnnnnnnngttcttttcaagatccatgagagtgtggataaagtgaattcagaagaaagagataataag |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37748960 |
aggcttcctgcgagaaatccatgaaaggagat-aaaaaaagctcttttcaagatccat--gagtgtggataaagtgaattcagaagaaagagataataag |
37748864 |
T |
|
| Q |
424 |
gctctgttcttggtccataaaagtatggataaggtgaattcagattgg----atttcttctaccaaaagtgtagattcttctacccaacgtgcaaat |
516 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37748863 |
gctctggttttggtccataaaagtatggataaggtgaattcagattggattaatttcttctaccaaaagtgtagattcttctacccaaagtgcaaat |
37748767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37747718 - 37747685
Alignment:
| Q |
1 |
ttctaatctttctctcgattatgcatgtgcatgt |
34 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
37747718 |
ttctaatctttctctcgattatgtatgtgcatgt |
37747685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 31 - 516
Target Start/End: Original strand, 43039573 - 43040064
Alignment:
| Q |
31 |
atgtgcatgttctatcagtggcatcagagcctctggttcgtgatccacggggtttcaaggatagcttccgcaaagagaatgcaattcattatcaactaaa |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| | | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43039573 |
atgtgcatgttctatcagtggcatcagagcctctggttcatgatccatgtggttttaggcatagcttccgcaaagagaatgcaattcattatcaactaag |
43039672 |
T |
|
| Q |
131 |
caacaaggcagatgtggtaatggttgatgcatatgagattggcacttggttattgata-------tgtcaataatggcttttgaaaaggagttttctcat |
223 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43039673 |
caacaaggcagaggtggtaatggtttatgcatatgttattagcacttggttattgatacatgtggtgtcaataatggcttttgaaaaggagttttctcaa |
43039772 |
T |
|
| Q |
224 |
gtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaagaggaagaga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43039773 |
gtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagagattgctagaaaagatccaaagtggtattcaaaaagaggaagaga |
43039872 |
T |
|
| Q |
324 |
aggcttcctgcgagaaatccatgaaaggagatnnnnnnnngttcttttcaagatccatgagagtgtggataaagtgaattcagaagaaagagataataag |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43039873 |
aggcttcctgcgagaaatccatgaaaggagat--aaaaaggctcttttcaagatccatgagagtgtggataaagcgaattcagaagaaagagataataag |
43039970 |
T |
|
| Q |
424 |
gctctgttcttggtccataaaagtatggataaggtgaattcagattggatttcttctaccaaaagtgtaga-ttcttctacccaacgtgcaaat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
43039971 |
gctctgttcttggtccataaaagtatggataaagtgaattcagattgaattttttttaccaaaagtgtagatttcttctacccaaagtgcaaat |
43040064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 31 - 355
Target Start/End: Complemental strand, 13109084 - 13108758
Alignment:
| Q |
31 |
atgtgcatgttctatcagtggcatcagagcctctggttcgtgatccacggggtttcaaggatagcttccgcaaagagaatgcaattcattatcaactaaa |
130 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | |||||| | ||||| |||||||||| ||| ||| || ||||||| ||||||||||||||||| | |
|
|
| T |
13109084 |
atgtgcatgttctatcagcggcatcagagcatttggttcattatccatggggtttcaaacatatctttcgtaaagagattgcaattcattatcaacggag |
13108985 |
T |
|
| Q |
131 |
caacaaggcagatgtggtaatggttgatgcatatgagattggcacttggttattgata-------tgtcaataatggcttttgaaaaggagttttctcat |
223 |
Q |
| |
|
||||||||| ||||||||||||| ||||| || ||| |||||||||||||| | ||||||||||| || ||||||| ||||||||| | |
|
|
| T |
13108984 |
caacaaggctt-tgtggtaatggtttatgcaagggaaattaacacttggttattgacacatgtattgtcaataatgtctattgaaaatgagttttcttaa |
13108886 |
T |
|
| Q |
224 |
gtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaaagatccaaagtggtattcaaaaagaggaagaga |
323 |
Q |
| |
|
|| ||||| |||| ||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
13108885 |
gttaagaatcgggaaaagtgtgtactgaggatacaagaaatctttggtttgcaaagattgctagaaaagatccaaagacgtat----aaagaggaagaga |
13108790 |
T |
|
| Q |
324 |
aggcttcctgcgagaaatccatgaaaggagat |
355 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |
|
|
| T |
13108789 |
aggcttcctgcgagaaatccatggaaagagat |
13108758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 490
Target Start/End: Complemental strand, 13108718 - 13108596
Alignment:
| Q |
366 |
tcttttcaagatccatgagagtgtggataaagtgaattcagaagaaagagataataaggctctgttcttggtccataaaagtatggataaggtgaattca |
465 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| | || ||| || | |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13108718 |
tcttttcaagatccatgag--tgtggatgaagtgaattcaaaggagagacatcagaaggctctgttcttagtccataaaagtatggataaggtgaattca |
13108621 |
T |
|
| Q |
466 |
gattggatttcttctaccaaaagtg |
490 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13108620 |
gattggatttcttctaccaaaagtg |
13108596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 43379352 - 43379269
Alignment:
| Q |
193 |
aataatggcttttgaaaaggagttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgca |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| || ||||| ||| ||||||||| || ||||||||||| |||| |
|
|
| T |
43379352 |
aataatggcttttgaaaaagagttttctcaagtcaagaattgagagaaatggatagtgaggaagaaaaaaatctttggtctgca |
43379269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 50329485 - 50329377
Alignment:
| Q |
191 |
tcaataatggcttttgaaaaggagttttctcatgtcaagaaatgggagaagtgggtagtgaggatacaagaaatctttggtttgcagatattgctagaaa |
290 |
Q |
| |
|
||||||||| ||||| || | ||||||||||| |||||||| || |||||||| |||||||||| | ||||||| |||||||||| | | ||||||||| |
|
|
| T |
50329485 |
tcaataatgactttttaagaagagttttctcaggtcaagaattgtgagaagtgtctagtgaggatgcgagaaatc-ttggtttgcaaagaatgctagaaa |
50329387 |
T |
|
| Q |
291 |
agatccaaag |
300 |
Q |
| |
|
|||||||||| |
|
|
| T |
50329386 |
agatccaaag |
50329377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34486325 - 34486292
Alignment:
| Q |
1 |
ttctaatctttctctcgattatgcatgtgcatgt |
34 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
34486325 |
ttctaatctttctctcgattatgtatgtgcatgt |
34486292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University