View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_13 (Length: 496)
Name: NF17811_low_13
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 38900431 - 38899960
Alignment:
| Q |
11 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
110 |
Q |
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| T |
38900431 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
38900332 |
T |
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| Q |
111 |
cacgtttataccctttcaatgaatnnnnnnntctttcttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
210 |
Q |
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| T |
38900331 |
cacgtttataccctttcaatgaataaaaaaatcttccttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
38900232 |
T |
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| Q |
211 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgcaaagcc |
310 |
Q |
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| T |
38900231 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgcaaagcc |
38900132 |
T |
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| Q |
311 |
tcgcagaaaaactccacaaaggacatggatttgagtctagaaaaattaaacagttcttcttccactaaaacaaccagccttggtgatgatttggttacac |
410 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38900131 |
tcacagaaaaactccacaaaggacatggatttgagtctagaaaaattaaacagttcttcttccactaaaacaaccagccttggtgatgatttggttacgc |
38900032 |
T |
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| Q |
411 |
agtcgagaaaagctttgaccaatgagaaactcctgtttggcatccactgatgtatcatacaattgacaataa |
482 |
Q |
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| T |
38900031 |
agtcgagaaaagctttgaccaatgagaaactcctgtttggcatccactgatgtatcatacaattgacaataa |
38899960 |
T |
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