View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_18 (Length: 435)
Name: NF17811_low_18
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 31885113 - 31885536
Alignment:
| Q |
1 |
atttgtagaaatgtgttgccccactggttgtgctttatgtaatgcggaaatggaaaacagttttcatctcttttcaatgtcagaagagcgttttatgttg |
100 |
Q |
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| T |
31885113 |
atttgtagaaatgtgttgccctactggctgtgctttatgtaatgtggaaatggaaaacagttttcatctcttttcaatgtcagaagagcgttttatgttg |
31885212 |
T |
|
| Q |
101 |
gcaaaaatcagggcagcatactattctaaacttgttacggccagacttgtcaatggcggaaaacattttttgaaattctgcagaatatgagttcagagca |
200 |
Q |
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| T |
31885213 |
gcaaaaatcagggcagcatactattctaaacttgttacggccagacttgtcaatggcggaaaacattttttgaaattctgcagaatatgagttaagagca |
31885312 |
T |
|
| Q |
201 |
gcaggccttgtttttggtaatgcggagtttatggaatcccatgaataattgtatttggaataatattgttgaacaaattgatgccatccacaattgcggg |
300 |
Q |
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| T |
31885313 |
gcaggccttgtttttggtaatgcggagtttatggaatcccatgaataattgtatttggaataatattgttgaacaaattgatgccatccacaattgcggg |
31885412 |
T |
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| Q |
301 |
ttacatttgctgtccaattggagaagtgcgggttgaaatacttctactggttgattcaaatgtgagattgatgcctttttctcgcctattcttgaagtgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31885413 |
ttacatttgctgtccaattggagaagtgcgggttgaaatacttctactggttgattcaaatgtgagattgatgcctttttctcgcctattcttgaagtgg |
31885512 |
T |
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| Q |
401 |
atacaggtgaagctttaggccttt |
424 |
Q |
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|||||||||||||||||||||||| |
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| T |
31885513 |
atacaggtgaagctttaggccttt |
31885536 |
T |
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