View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_19 (Length: 433)
Name: NF17811_low_19
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 44829317 - 44829073
Alignment:
| Q |
20 |
acatttattatttatccaacattgaaatcatcaataaccgatgtatatactaaccactcatataaatagcaaactcctctgtaccatttatccatcacac |
119 |
Q |
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| T |
44829317 |
acatttattatttatcaaacattgaaatcatcaataaccgatgtatatactaaccactcatataaatagcaaactcctgtgtaccatttatccatcacac |
44829218 |
T |
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| Q |
120 |
atcaaagtaacacaactacacctccccctaaaaatatagagaaaaagatataatttatccttttaggtcttgctttgtcaagctattttgttactctcat |
219 |
Q |
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| T |
44829217 |
atcaaagtaacacaactacacctccccctaaaaatatagagaaaaagatataatttatccttttaggtcttgatttgtcaagctattttgttactctcat |
44829118 |
T |
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| Q |
220 |
atagaatatggtattataattatctatctaatatcatattagatt |
264 |
Q |
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| T |
44829117 |
atagaatatggtgaaataattatctatctaatatcatattagatt |
44829073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 44829048 - 44828890
Alignment:
| Q |
262 |
attagatttttatattaaatctaactgattcttataataccaacttgtaaaatgaagtgcatcccaccttataaactcactttaaatttatgtgagattt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44829048 |
attagatttttatattaaatctaactgattcttataataccaacttgtaaaatgaagtgcatcgcaccttataaactcactttaaatttatgtgagattt |
44828949 |
T |
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| Q |
362 |
ga-nnnnnnncatccaatattgaaatactcgacagtattaaaaagtaaatgagtattat |
419 |
Q |
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| T |
44828948 |
gattttttttcatccaatattgaaatactcgacagtattaaaaagtaaatgagtattat |
44828890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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