View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_2 (Length: 810)
Name: NF17811_low_2
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_2 |
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| [»] scaffold1084 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 295 - 658
Target Start/End: Original strand, 4594678 - 4595045
Alignment:
| Q |
295 |
gtaaatgtaaaccattgtggtttgtttcgtttgacttgatttattgttgattgaaaactgaagtatttgacatatcaagttggattatgttgggaaattg |
394 |
Q |
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| T |
4594678 |
gtaaatgtaaaccattgtgatttgtttcgtttgacttgatttattgttgattgaaaactgaaggatttgacatatcaagttggattatgttgggaaattg |
4594777 |
T |
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| Q |
395 |
t--tacatttttctgttgcaaattctttttcaaacaaagcgtttttatggannnnnnnnnnn--gaggaataggataatcatggaaactgaaaatgtggc |
490 |
Q |
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| T |
4594778 |
tgttacatttttctgttgcaaattctttttcaaacaaagcgtttttatggatttttttttttttgaggaataggataatcatggaaactgaaaatgtggc |
4594877 |
T |
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| Q |
491 |
tactgcgagttggtgcagctcctctgatgtgtgattaaccttttattctattctgcagtactctatatttgtttgtggtctaactttcaagagagaacaa |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |
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| T |
4594878 |
tactgcgagttggtgcagctcctctgatgtgtgattaaccttttattctattctgcagtactctatatttgtctgtggtctaattttcgagagagaacaa |
4594977 |
T |
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| Q |
591 |
gagttgttgcgttgcggggattgggacggacaaacagaaaagggaagaagaatggagggtgagttggt |
658 |
Q |
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| T |
4594978 |
gagttgttgcgttgcggggattgggacggacaaacagaaaagggaagaagaatggagggtgagttggt |
4595045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 4594366 - 4594640
Alignment:
| Q |
13 |
tcagttttgaaattattatactgaaattgaatcaggatattgaaattgaaattgaattaagatagtgatagcagagcagcactgaaattgaatttgattt |
112 |
Q |
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| T |
4594366 |
tcagttttgaaattattatactgaaattgaatcag-atattgaaattgaaattgaattaagacagtgatagcagagcagcactgaaattgaaattgattt |
4594464 |
T |
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| Q |
113 |
taacttttagtgttgcctcac------tgatattggaagcaaaccactgtttcataagaatcatcaatgcattcaaaaagtgataacacatcattatatg |
206 |
Q |
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| T |
4594465 |
taacttttagtgttgcctcactgtcactgatattggaagcaaaccactgtttcataagaatcatcaatgcattcaaaaagtgataacacatcattatatg |
4594564 |
T |
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| Q |
207 |
ataatgtgaaaccatatctaccacagtaatatcagaagnnnnnnncaatttcaattgagttaatcaatcatcgaag |
282 |
Q |
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| T |
4594565 |
ataatgtgaaaccatatcaaccacagtaaaatcagaagaaaaaaacaatttcaattgagttaatcaatcatcgaag |
4594640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 715 - 795
Target Start/End: Original strand, 4595102 - 4595182
Alignment:
| Q |
715 |
taaacctagaacaagtaaagacacgtgctatcagcctgttcaaagccatatcaaggattctcgaagattttgatgcctatg |
795 |
Q |
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| T |
4595102 |
taaacctagaacaagtaaagacacgtgctatcagcctgttcaaagctatatcaaggattctcgaagattttgatgcctatg |
4595182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 21214343 - 21214386
Alignment:
| Q |
37 |
aattgaatcaggatattgaaattgaaattgaattaagatagtga |
80 |
Q |
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| T |
21214343 |
aattgaattaggatattgaaattgaaattgaatcgagatagtga |
21214386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 45298874 - 45298831
Alignment:
| Q |
37 |
aattgaatcaggatattgaaattgaaattgaattaagatagtga |
80 |
Q |
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| T |
45298874 |
aattgaatcatgatattgaaattgaaattgaattaagatagtga |
45298831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 363 - 317
Alignment:
| Q |
34 |
tgaaattgaatcaggatattgaaattgaaattgaattaagatagtga |
80 |
Q |
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| T |
363 |
tgaaattgaatcaggatattgaaattgaaaccgaattaagatagtga |
317 |
T |
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