View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_20 (Length: 422)
Name: NF17811_low_20
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 43963635 - 43964029
Alignment:
| Q |
11 |
catcatcacgcatgggccatccaagagaaaagcaatcaggtgtcctgcaacaaaatacattgatcactaaatcaataaattgtcaattaattaaagacga |
110 |
Q |
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| T |
43963635 |
catcatcacgcatgggccatccaagagaaaagcaatcaggtgtcctgcaacaaaatacattgatcactaaatcaataaattgtcaattaattaaagacaa |
43963734 |
T |
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| Q |
111 |
aacaagccagaaaaatcggattcaataggatatgaaaccaaaagccaaactaaccagaaatactcatttagatcatcgtaattgcaccaggctgagtgag |
210 |
Q |
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| T |
43963735 |
aacaagccagaaaaatcggattcaataggatatgaaaccaaaagccaaactaaccagaaatactcatttagatcatcgtaattgcaccaggctgagtgag |
43963834 |
T |
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| Q |
211 |
gagccattccatttctgcttttctcagcttcctgtattaattaattgattatagctcatcacttagtagaaaggtacctgaagctagctaacaacgacca |
310 |
Q |
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| T |
43963835 |
gagccattccatttctgcttttctcagcttcctgtattaattaattgattatagctcatcacttagtagaaaggtacctgaagctagctaacaacgacca |
43963934 |
T |
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| Q |
311 |
taacagaaagaagaagaaaaagcataccgtatgaatgactttgtatatgggagatataaccttgcgcaagaatgcctcatcatcaccaccataag |
405 |
Q |
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| T |
43963935 |
taacagaaagaagaagaaaaagcataccgtatgaatgactttgtatatgggagatataaccttgcgcaagaatgcctcatcatcaccaccataag |
43964029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 39166278 - 39166365
Alignment:
| Q |
157 |
aaactaaccagaaatactcatttagatcatcgtaattgcaccaggctgagtgaggagccattccatttctgcttttctcagcttcctg |
244 |
Q |
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| T |
39166278 |
aaacaaaccaaaaatactcatttagatcatcatagttggaccatgctgagtgtgaagcctttccatttctgcttttcttagattcctg |
39166365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39166144 - 39166196
Alignment:
| Q |
11 |
catcatcacgcatgggccatccaagagaaaagcaatcaggtgtcctgcaacaa |
63 |
Q |
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| T |
39166144 |
catcatcacgcataggccatccaagagaaaagcaatcaagtgacctgcaacaa |
39166196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 5539154 - 5539224
Alignment:
| Q |
157 |
aaactaaccagaaatactcatttagatcatcgtaattgcaccaggctgagtgaggagccattccatttctg |
227 |
Q |
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|||| ||||| |||||||||||||||||||| || |||||||| |||||||| | |||| ||||||||||| |
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| T |
5539154 |
aaacaaaccaaaaatactcatttagatcatcatagttgcaccatgctgagtgtgaagcctttccatttctg |
5539224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 5539020 - 5539072
Alignment:
| Q |
11 |
catcatcacgcatgggccatccaagagaaaagcaatcaggtgtcctgcaacaa |
63 |
Q |
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||||||||| || |||||||||||||||||||||||| ||| |||||||||| |
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| T |
5539020 |
catcatcacctataggccatccaagagaaaagcaatcaagtgacctgcaacaa |
5539072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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