View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_22 (Length: 408)
Name: NF17811_low_22
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 5045203 - 5045560
Alignment:
| Q |
12 |
attattctactagtatttttatttctaagtgtatgcttactacaacaatacaatgaaaaataagaaatttgttcatatacagccaattgttatgttcata |
111 |
Q |
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| T |
5045203 |
attattctactagtatttttatttctaagtgtatgcttactacaacaatacaatgaaaaataagaaatttgttcatatacagccaattgttatgctcata |
5045302 |
T |
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| Q |
112 |
tgtttatgaaattttgannnnnnn-gtccactttattattgtatatgtagttggtcattcaaatcagtatttcttatgtctttgatataagccaatttgt |
210 |
Q |
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| T |
5045303 |
tgtttatgagatttagattttttttgtccactttattattgtatatgtagttggtcattcaaatcagtatttcttatgtctttgatataagccaatttgt |
5045402 |
T |
|
| Q |
211 |
tcatatatggtatggtccacgattctacaactagtccatccaagagataattttttagattgaattgttggatactgacttatgaaattgtagaaattga |
310 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045403 |
tcatatatggcatggtctacgattctacaactagtccatccaagagataattttttagattgaattgttggatactgacttatgaaattgtagaaattga |
5045502 |
T |
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| Q |
311 |
tattttaatggtatagttcctcctgatccatgctattttacttcataaatagaaatgg |
368 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5045503 |
tattttaatggtatagttcttcctgatccatgctattttacttcataaatagaaatgg |
5045560 |
T |
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