View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_23 (Length: 405)
Name: NF17811_low_23
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 27980 - 27589
Alignment:
| Q |
14 |
cacagacatcagactagtgattagtgaacatgagttgacattctgtgttttctgaggatcctgttgccttgagaaggcgttagtcagataccatgttttt |
113 |
Q |
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| T |
27980 |
cacaaacatcagactagtgattagtgaacatgagttgacattctgtgttttctgaggatcctgttgccttgagaaggcgttagtcagataccatgttttt |
27881 |
T |
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| Q |
114 |
acttactagggctgaatattgtgccagaatcatagtgaagcaatttggttagataatagtatacacactcacggatttttaacatctatctaaacatcaa |
213 |
Q |
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| T |
27880 |
acttactagggctgaatattgtgccagaatcatagtgaagcaatttggttagataatagtatacacactcacggatttttaacatctatctaaacatcaa |
27781 |
T |
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| Q |
214 |
ttctttaaatccctggtgatcagttttgagttttgactctgaatttctttcacggcaaatagtgtctccaattccctctgcctaggtagaggttatttac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27780 |
ttctttaaatccctggtgatcagttttgagttttgactctgaatttctttcacggcaaatagtgtctccaattccctctgcctaggtagaggttatttac |
27681 |
T |
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| Q |
314 |
atgcaaaagccatagctaaccttgtactgcttcttaacgaaataggctatagtattgcatgtgctgctagggtcactggtcagcattagcaa |
405 |
Q |
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| T |
27680 |
atgcaaaagccatagctaatcttgtactgcttcttaacgaaataggctatagtattgcatgtgctgctagggtcactggtcagcattagcaa |
27589 |
T |
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