View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_26 (Length: 369)
Name: NF17811_low_26
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 1373263 - 1372911
Alignment:
| Q |
1 |
atatacttctgcttgaattgcaaaacctgtactcaaacttatatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373263 |
atatacttctgcttgaattgcaaaacctatactcaaacttatatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaat |
1373164 |
T |
|
| Q |
101 |
gcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373163 |
gcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcca |
1373064 |
T |
|
| Q |
201 |
ccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttactggggc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373063 |
ccaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttactggggc |
1372964 |
T |
|
| Q |
301 |
aatcaatattagccattactttttccaccctatttggttcttgagcgccctat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1372963 |
aatcaatattagccattactttttccaccctatttggttcttgagcgccctat |
1372911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1383535 - 1383248
Alignment:
| Q |
1 |
atatacttctgcttgaattgcaaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaa |
99 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||| | |||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1383535 |
atatacttctgcttgaattgcaaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtcttataaattgtggtaa |
1383436 |
T |
|
| Q |
100 |
tgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcc |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383435 |
tgcttcataataccattttgt-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcc |
1383343 |
T |
|
| Q |
200 |
accaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttac |
294 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
1383342 |
accaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattggctccttac |
1383248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 1389640 - 1389353
Alignment:
| Q |
1 |
atatacttctgcttgaattgcaaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaa |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | |||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1389640 |
atatacttctgcttgaattgcaaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtcttataaattgtggtaa |
1389541 |
T |
|
| Q |
100 |
tgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcc |
199 |
Q |
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| T |
1389540 |
tgcttcataataccattttgt-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagcc |
1389448 |
T |
|
| Q |
200 |
accaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttac |
294 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
1389447 |
accaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattggctccttac |
1389353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1357910 - 1357650
Alignment:
| Q |
1 |
atatacttctgcttgaattgcaaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaa |
99 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||| |||||||| | | |||| |||| |||||||||||||||||| || |||||||||||| |
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| T |
1357910 |
atatacttctgcttgaatttcaaagcctatactcaaacttgctatatataatgtctttatttttgtatttccaatattatggttctaaaaattgtggtaa |
1357811 |
T |
|
| Q |
100 |
-----tgcttcataataccattttgttgg-ttgtgaatatgataaactttgctgccatatcaaccacacaggaa---tggaaatttttgtgctagcctta |
190 |
Q |
| |
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|||| |||||||| |||||||| | ||||||| ||||||||| |||| ||||| ||||||||| || |||||||||||||| | |||||| |
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| T |
1357810 |
ctggttgctgcataatacaattttgtttgattgtgaaaatgataaacattgcagccatt--aaccacacaacaagattggaaatttttgtggt-gcctta |
1357714 |
T |
|
| Q |
191 |
tcattagccaccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatat |
254 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||| |
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|
| T |
1357713 |
tctttagccaccaatatgaaattgccacgtgtagttgtgtgactattaatgcttccataaatat |
1357650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 1349965 - 1349767
Alignment:
| Q |
5 |
acttctgcttgaattgcaaaacctgtactcaaactta-tatatatacta-tttttaattttctatttccaatattatggtcttataaattgtggtaa--- |
99 |
Q |
| |
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|||||| ||||||||||||| | | |||| |||||| |||||||| | |||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
1349965 |
acttctacttgaattgcaaagcttctactaaaacttgctatatataatggtttttatttttctatttccaatattatggtctta-atattgtggtaattg |
1349867 |
T |
|
| Q |
100 |
--tgcttcataataccattttgtt-ggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcatta |
196 |
Q |
| |
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| || | |||||||| ||||| | || |||| ||||||| | ||| | |||| ||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
1349866 |
gctactgcctaataccaacttgttagattttgaaaatgataatcattgaacctatattaaccacacaagaatggaaatttgtgtgttagccttatcatta |
1349767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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