View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_low_30 (Length: 357)
Name: NF17811_low_30
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_30 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 15002300 - 15002622
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15002300 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaacatcgggtggcacctttcatagtcataatactaacaaaattttggtgctagttcta |
15002399 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002400 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
15002499 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002500 |
aattgaaaattgaaaatctatttgaaatatggagctttgatggaaaaatggtgtacgagaacataatcgaagccacagaagattttgacaacaagcatct |
15002599 |
T |
|
| Q |
315 |
cattggggttggaggacatggaa |
337 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15002600 |
cattggggttggaggacatggaa |
15002622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 15037213 - 15037534
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15037213 |
caaaggcttatgtggtaatgtctctggcctagagccttgctcaacatcgggtggcacctttcatagtcataatactaacaaaattttggtgctagttcta |
15037312 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
15037313 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcatacc-tctttgtcgaacttcaagcacaaaagaacacaagccagcacaag |
15037411 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15037412 |
aatttcaaattgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacattatcgaagccactgaagattttgacaacaagcatct |
15037511 |
T |
|
| Q |
315 |
cattggggttggaggacatggaa |
337 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15037512 |
cattggggttggaggacatggaa |
15037534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 15011193 - 15011515
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15011193 |
caaaggcttatgtggtaatgtctctggcctagagccttgctcaacatctggtggcaaatttcattatcataagactaacaaaattttggtgctagttcta |
15011292 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15011293 |
tccctcactctaggccctctactgttagcattaattgtttatgggatctcataccttttgtgtcgaacttcaagcacaaaagaatacaagcctgtacaag |
15011392 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011393 |
aatttcaaattgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacataatcgaagccacagaagattttgacaacaagcatct |
15011492 |
T |
|
| Q |
315 |
cattggggttggaggacatggaa |
337 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15011493 |
cattggggttggaggacatggaa |
15011515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 14532664 - 14532340
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | |||||||| ||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| || |
|
|
| T |
14532664 |
caaaggcttgtgtggtaatgtctctggcctagtgtgttgctcaacatcaggtggcaactttcatagtcataagactagcaatattttggtgctagtttta |
14532565 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
|||||||||| || |||||||||| ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||| | ||| ||| |
|
|
| T |
14532564 |
cccctcactctaggtactctattgttggcattttttgcttacgggatctcataccttttttgtcaaacttcaagcacaaaagaagacaaccacgcagaag |
14532465 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14532464 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
14532365 |
T |
|
| Q |
315 |
cattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
14532364 |
cattggggttggagggcatggaagt |
14532340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 15017312 - 15017632
Alignment:
| Q |
19 |
ggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttctatccc |
118 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
15017312 |
ggcttgtgtggtaatatctctggcctagagccttgctcaatatctggtggcaagtttcataatcataagacaaacaaaatttgggtgctagttctatcac |
15017411 |
T |
|
| Q |
119 |
tcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaagaatt |
218 |
Q |
| |
|
||||||| || |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15017412 |
tcactctaggtcctctactgttagcattaattgtttatgggatctcatactttttttgtcgaacttcaagcacagaagaatacaagcctgcacaagaatt |
15017511 |
T |
|
| Q |
219 |
tcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcatt |
318 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15017512 |
tcaaattgaaaatctatttgaaatatggagctttgatggcaaaatggtgtatgagaacataatcgaagccacggaagattttgacaacaaacatctcatt |
15017611 |
T |
|
| Q |
319 |
ggggttggaggacatggaagt |
339 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
15017612 |
ggggttggaggacatgcaagt |
15017632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 15032651 - 15032969
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15032651 |
caaaggcttatgtggtaatgtctctggcctagagccttgctcaacatctggtggcaaatttcataatcataagactaacaaaattttggtgctagttcta |
15032750 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
15032751 |
tccctcactctaggccctctactgttagcattaattgt------gatctcataccttttgtgtcgaatttcaagcgcaaaagaatacaagcctgcacaag |
15032844 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
15032845 |
aatttcaaattgaaaatctgtttgaaatatggagctttgatggcaaaatggtgtacgagaacataatcgaagccactgaagattttgacgacaagcatct |
15032944 |
T |
|
| Q |
315 |
cattggggttggaggacatggaagt |
339 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
15032945 |
ccttggggttggaggacatggaagt |
15032969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 14522543 - 14522219
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||| ||||| | ||| ||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
14522543 |
caaaggcttgtgcggtaatgtctctggcctagagccttgctcaacatcaggtggaaacttccatagtcataaaactaacaaaattttggtgctagtttta |
14522444 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||| |||||| || | ||| |
|
|
| T |
14522443 |
tccctcactctaggccctttattgttagcattatttgtttatgggatctcataccaattttgttgcacttcaagcacaaaagaagacaagcatgtagaag |
14522344 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
14522343 |
aatttcaaactgaaaatctatttacaatatggagctttgatggaaaaatggtgtatgagaatatcatcgaagccacagaagattttgacaacaagaatct |
14522244 |
T |
|
| Q |
315 |
cattggggttggaggacatggaagt |
339 |
Q |
| |
|
||| |||||||||| |||||||||| |
|
|
| T |
14522243 |
catcggggttggagtacatggaagt |
14522219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 136 - 339
Target Start/End: Original strand, 14483065 - 14483268
Alignment:
| Q |
136 |
ttgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaagaatttcaaactgaaaatctat |
235 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | | | ||||||||||| || |||||||| |||| |||| |||||| || |||||||||||| |
|
|
| T |
14483065 |
ttgttagcattatttgtttatggtatctcatattatctatttcgaacttcaaacaaaaaagaatccaaggttgcagaagaatcacaccctgaaaatctat |
14483164 |
T |
|
| Q |
236 |
ttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatgg |
335 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14483165 |
tttcaatatggagttttgattgaaaaatggtgtacgagaacattatcgaagccacaaaagattttgacaacaagcatctcattggggttggaggacatgg |
14483264 |
T |
|
| Q |
336 |
aagt |
339 |
Q |
| |
|
|||| |
|
|
| T |
14483265 |
aagt |
14483268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 339
Target Start/End: Original strand, 14468062 - 14468320
Alignment:
| Q |
81 |
tcataagactaacaaaattttggtgctagttctatccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcga |
180 |
Q |
| |
|
||||||||||||||||| |||||| || || || || ||||||| ||| | | ||||||||||| ||| |||||||||||| || | | | |||| |
|
|
| T |
14468062 |
tcataagactaacaaaaaattggtggtaattttacccatcactctaggcatttttttgttagcattatttggttatgggatctcctattatctatttcga |
14468161 |
T |
|
| Q |
181 |
acttcaagcacaaaagaatacaagcctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccatta |
280 |
Q |
| |
|
||||| | || |||||||| |||| |||| |||||| || ||||||||||||||| |||||||||| |||||||||||||| ||||| || | |||| |
|
|
| T |
14468162 |
acttcgaacagaaaagaatccaaggttgcagaagaatcacacactgaaaatctattttcaatatggagttttgatggaaaaattgtgtatgaaaacattg |
14468261 |
T |
|
| Q |
281 |
tcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagt |
339 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14468262 |
ttgaagccacagaagagtttgacaacaagcatctcattggggttggaggacatggaagt |
14468320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 81 - 339
Target Start/End: Original strand, 14504241 - 14504499
Alignment:
| Q |
81 |
tcataagactaacaaaattttggtgctagttctatccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcga |
180 |
Q |
| |
|
||||||||||||||||| |||||| || || || || ||||||| ||| | | ||||||||||| ||| |||||||||||| || | | | |||| |
|
|
| T |
14504241 |
tcataagactaacaaaaaattggtggtaattttacccatcactctaggcatttttttgttagcattatttggttatgggatctcctattatctatttcga |
14504340 |
T |
|
| Q |
181 |
acttcaagcacaaaagaatacaagcctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccatta |
280 |
Q |
| |
|
||||| | ||||||||||| |||| |||| |||||| || ||||||||||||||| |||||||||| |||||||||||||||||||| || | ||| |
|
|
| T |
14504341 |
acttcgaacacaaaagaatccaaggttgcagaagaatcacacactgaaaatctattttcaatatggagttttgatggaaaaatggtgtatgaaaatattg |
14504440 |
T |
|
| Q |
281 |
tcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagt |
339 |
Q |
| |
|
| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
14504441 |
tagaagccacagaagagtttgacaacaaacatctcatcggggttggaggacatggaagt |
14504499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 15040937 - 15041029
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatag--tcataagactaacaaaattttggtg |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| ||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
15040937 |
caaaggcttgtgtggtaatgtctctggcctagagcattgctcaacatctggtggcaactttcatagtctcataatactaacacaattttggtg |
15041029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 15041025 - 15041104
Alignment:
| Q |
263 |
tggtgtacgagaccattatcgaagccacagaagattttgacaacaagc---atctcattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||| |||| || ||||||||||| ||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
15041025 |
tggtgtatgagaatatcatcgaagccactgaagattttgacagcaagatcaatctcattggggttggagtacatggaagt |
15041104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 12972 - 13303
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcata---------gtcataagactaacaaaattttggtg |
105 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
12972 |
caaaggcttgtgtggtaatgtctctggtctagagccttgctcaacatcaggtggaaactttcataactttcatagtcataagactaacaaaattttggat |
13071 |
T |
|
| Q |
106 |
ctagttctatccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagc |
205 |
Q |
| |
|
|||||| || |||||||||| || |||||||||||||||| ||||||||||| ||||||||||||| | | |||||||| | |||||||||||||| |
|
|
| T |
13072 |
ctagttttacccctcactcttggaactctattgttagcattatttgtttatgggttctcataccttttctaccacacttcaagaaaaaaagaatacaagc |
13171 |
T |
|
| Q |
206 |
ctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaa |
305 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
13172 |
ctacagaagaatttcaaactgaaaatctctttgcaacatggagctttgatggaaaaatggtatatgagaacataatcgaagccacagaagattttgacaa |
13271 |
T |
|
| Q |
306 |
caagcatctcattggggttggaggacatggaa |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13272 |
caagcatctcattggggttggaggacatggaa |
13303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 6684 - 7005
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||| || ||||| | ||||||||||||||||||||| | ||||||||| | ||| || |
|
|
| T |
6684 |
caaaggcttgtgtggtaac---tctggcttagagccttgctcaacattaggtggtaactttcatagtcataagactaaacacattttggtggttgtttta |
6780 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
|| ||||||| ||| ||||||||| |||||| || ||||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
6781 |
cccatcactctaggcactctattgtcagcattatttctttatggcctctcatgccttttatgtcgaacttcaagcacaaaagaatacaagactgcaggag |
6880 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
6881 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaattggtgtatgagaacattgttgaagcaactgaagagtttgacaacaagcatct |
6980 |
T |
|
| Q |
315 |
cattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||| | |||||||| |||||| |
|
|
| T |
6981 |
cattgggataggaggacacggaagt |
7005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 13615 - 13946
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcata---------gtcataagactaacaaaattttggtg |
105 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
13615 |
caaaggcttgtgtggtaatgtctctggtctagagccttgctcaacatcaggtggaaactttcataactttcatagtcataagactaacaaaattttggat |
13714 |
T |
|
| Q |
106 |
ctagttctatccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagc |
205 |
Q |
| |
|
|||||| || |||||||||| || |||||||||||||||| ||||||||||| ||||||||||||| | | |||||||| | |||||||||||||| |
|
|
| T |
13715 |
ctagttttacccctcactcttggaactctattgttagcattatttgtttatgggttctcataccttttctaccacacttcaagaaaaaaagaatacaagc |
13814 |
T |
|
| Q |
206 |
ctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaa |
305 |
Q |
| |
|
|| || |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
13815 |
ctacagaagaatttcaaactgaaaatctctttgcaacatggagctttgatggaaaaatggtatatgagaacataatcgaagccacagaagattttgacaa |
13914 |
T |
|
| Q |
306 |
caagcatctcattggggttggaggacatggaa |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13915 |
caagcatctcattggggttggaggacatggaa |
13946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 7328 - 7649
Alignment:
| Q |
15 |
caaaggcttgtgtggtaatgtttctggcctagagccttgctcaaaatcgggtggcacctttcatagtcataagactaacaaaattttggtgctagttcta |
114 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||| || ||||| | ||||||||||||||||||||| | ||||||||| | ||| || |
|
|
| T |
7328 |
caaaggcttgtgtggtaac---tctggcttagagccttgctcaacattaggtggtaactttcatagtcataagactaaacacattttggtggttgtttta |
7424 |
T |
|
| Q |
115 |
tccctcactctcggccctctattgttagcattgattgtttatgggatctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaag |
214 |
Q |
| |
|
|| ||||||| ||| ||||||||| |||||| || ||||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
7425 |
cccatcactctaggcactctattgtcagcattatttctttatggcctctcatgccttttatgtcgaacttcaagcacaaaagaatacaagactgcaggag |
7524 |
T |
|
| Q |
215 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
7525 |
aatttcaaactgaaaatctatttgcaatatggagctttgatggaaaattggtgtatgagaacattgttgaagcaactgaagagtttgacaacaagcatct |
7624 |
T |
|
| Q |
315 |
cattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||| | |||||||| |||||| |
|
|
| T |
7625 |
cattgggataggaggacacggaagt |
7649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 17027228 - 17027406
Alignment:
| Q |
161 |
tctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaa |
260 |
Q |
| |
|
|||||| |||||| | || |||||||| ||||||||||||||||| || || ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
17027228 |
tctcatgccttttctatctaacttcaatgacaaaagaatacaagccgacagaataatttcaaactgataatctatttgcagtatggagctttgatggaaa |
17027327 |
T |
|
| Q |
261 |
aatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17027328 |
aatggtgtatgagaacattatcgaagccaccgaagagtttgacaacaagtatctcattggggttggaggtcatggaagt |
17027406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 17557720 - 17557898
Alignment:
| Q |
161 |
tctcataccttttttgtcgaacttcaagcacaaaagaatacaagcctgcacaagaatttcaaactgaaaatctatttgcaatatggagctttgatggaaa |
260 |
Q |
| |
|
|||||| |||||| | || |||||||| ||||||||||||||||| || || ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
17557720 |
tctcatgccttttctatctaacttcaatgacaaaagaatacaagccgacagaataatttcaaactgataatctatttgcagtatggagctttgatggaaa |
17557819 |
T |
|
| Q |
261 |
aatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaagt |
339 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17557820 |
aatggtgtatgagaacattatcgaagccaccgaagagtttgacaacaagtatctcattggggttggaggtcatggaagt |
17557898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 5275 - 5182
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattgg |
320 |
Q |
| |
|
||||| ||||| | |||||||| |||||||| ||||||||||| |||| |||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
5275 |
aaaatgtatttactatatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaagcatctcattgg |
5182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 14108 - 14015
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattgg |
320 |
Q |
| |
|
||||| ||||| | |||||||| |||||||| ||||||||||| |||| |||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
14108 |
aaaatgtatttactatatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaagcatctcattgg |
14015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 17848933 - 17849045
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
326 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||| | || |||||||| || || || |
|
|
| T |
17848933 |
aaaatctatttaccatatggagttttgatggaaaaatggtgtatgagagtattattgaagccacagaagattttgatgataaacatctcatcggagtagg |
17849032 |
T |
|
| Q |
327 |
aggacatggaagt |
339 |
Q |
| |
|
||| || |||||| |
|
|
| T |
17849033 |
agggcagggaagt |
17849045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 15664949 - 15664856
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattgg |
320 |
Q |
| |
|
||||| ||||| |||||||||| |||||||| ||||||||||| |||| |||||| ||||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
15664949 |
aaaatgtatttacaatatggagttttgatgggaaaatggtgtatgagaacattattgaagcaacggaagagtttgatgacaagcatctcattgg |
15664856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 15676783 - 15676690
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattgg |
320 |
Q |
| |
|
||||| ||||| |||||||||| |||||||| ||||||||||| |||| ||| || ||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
15676783 |
aaaatgtatttacaatatggagttttgatgggaaaatggtgtatgagaacataattgaagccacataagagtttgatgacaagcatctcattgg |
15676690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 14606321 - 14606421
Alignment:
| Q |
239 |
caatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
338 |
Q |
| |
|
||||||||| ||||||||||||| | |||| |||| |||| | |||||||||||||||||||| | || ||||||||||| |||||||| |||||||| |
|
|
| T |
14606321 |
caatatggaactttgatggaaaatttttgtatgagaacattttggaagccacagaagattttgatgaaaaacatctcattggagttggagggcatggaag |
14606420 |
T |
|
| Q |
339 |
t |
339 |
Q |
| |
|
| |
|
|
| T |
14606421 |
t |
14606421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 16025498 - 16025598
Alignment:
| Q |
239 |
caatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
338 |
Q |
| |
|
||||||||| ||||||||||||| | |||| |||| |||| | |||||||||||||||||||| | || ||||||||||| |||||||| |||||||| |
|
|
| T |
16025498 |
caatatggaactttgatggaaaatttttgtatgagaacattttggaagccacagaagattttgatgaaaaacatctcattggagttggagggcatggaag |
16025597 |
T |
|
| Q |
339 |
t |
339 |
Q |
| |
|
| |
|
|
| T |
16025598 |
t |
16025598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 16103293 - 16103406
Alignment:
| Q |
226 |
gaaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttg |
325 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||| |||| || | |||| | |||||||||||||||||||| | || ||||| ||||| |||| |
|
|
| T |
16103293 |
gaaaatgtatttacaatatggaactttgatggaaaaattgtgtttgaaaacattgtggaagccacagaagattttgatgagaaacatctaattggtgttg |
16103392 |
T |
|
| Q |
326 |
gaggacatggaagt |
339 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
16103393 |
gggggcatggaagt |
16103406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 17825805 - 17825693
Alignment:
| Q |
227 |
aaaatctatttgcaatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttgg |
326 |
Q |
| |
|
||||||||||| | |||||||| ||||||| ||||||||||| |||| ||||| |||||||||| |||||||| | || |||||||| || ||||| |
|
|
| T |
17825805 |
aaaatctatttaccatatggagttttgatgacaaaatggtgtatgagaatattattcaagccacagacgattttgatgataaacatctcatcggagttgg |
17825706 |
T |
|
| Q |
327 |
aggacatggaagt |
339 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
17825705 |
agggcatggaagt |
17825693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 16172974 - 16173074
Alignment:
| Q |
239 |
caatatggagctttgatggaaaaatggtgtacgagaccattatcgaagccacagaagattttgacaacaagcatctcattggggttggaggacatggaag |
338 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||| ||| | ||||||||| |||||||||| |||| |||| ||||| |||||||| || ||||| |
|
|
| T |
16172974 |
caatatggaatttcgatggaaaaatggtctacgagaacatcttggaagccacacaagattttgatgacaaatatcttattggagttggagggcaaggaag |
16173073 |
T |
|
| Q |
339 |
t |
339 |
Q |
| |
|
| |
|
|
| T |
16173074 |
t |
16173074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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