View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_31 (Length: 349)
Name: NF17811_low_31
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 46222948 - 46223270
Alignment:
| Q |
8 |
atataatactgcattttgttagtcacgggacacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataatt |
107 |
Q |
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| T |
46222948 |
atataataatgcattttgttagtcacgggacacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataatt |
46223047 |
T |
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| Q |
108 |
acatagaacagatttgaagattatttattttattttatattaagagaagtagtattaaaaaagtacaagttaaggtactgaaattaacccaatataaata |
207 |
Q |
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| T |
46223048 |
acatagaacagatttgaagattatttattttattttatattaagagaagtagtattaaaaaagtacaagttaaggtactgaaattaacccaatataaata |
46223147 |
T |
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| Q |
208 |
aagagtgcaacatacaagaatcaacaacttnnnnnnnnttagtttaaaacccattacccaactaacaagagctcgtagcatcgctcatcgagagacaagg |
307 |
Q |
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| T |
46223148 |
aagagtgcaacatacaagaatcaacaacttaaaaaaaattagtttaaaacccattacccaactaacaagagctcgtagcatcgctcatcgagagacaagg |
46223247 |
T |
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| Q |
308 |
agagagaagttatggccccactc |
330 |
Q |
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| T |
46223248 |
agagagaagttatggccccactc |
46223270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 46343757 - 46343942
Alignment:
| Q |
37 |
acacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataattacatagaacagatttgaagattatttatt |
136 |
Q |
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| T |
46343757 |
acacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaac-------------catcaaaccactttgaagactatttatt |
46343843 |
T |
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| Q |
137 |
ttattttatattaagagaagtagtattaaaa-aagtacaagttaaggtactgaaattaacccaatataaataaagagtgcaacatacaagaatcaacaac |
235 |
Q |
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| T |
46343844 |
ttattt-atattaaaagaagtggtattaaaaaaagtacaagttaaggtactcaaattaacccaatataaat--agagtacaacatacaaaaaccaacaac |
46343940 |
T |
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