View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_33 (Length: 345)
Name: NF17811_low_33
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 33771210 - 33771365
Alignment:
| Q |
16 |
atgaacacacaacacacagttccataaataagtaaaagtgatagcatggcagagactcgcaatttcagccaatacatacnnnnnnnnnnnnnnnnnntaa |
115 |
Q |
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| T |
33771210 |
atgaacacacaacacacagttccataaataagtaaaagtgatagcatggcagagactcgcaatttcagccaatacatacagagaag------------aa |
33771297 |
T |
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| Q |
116 |
gtagcagcagcaggagcagcataaaatccgaatttgactcttctctgaaattatcgcattagatctca |
183 |
Q |
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| T |
33771298 |
gaagaataagtaggagcagcataaaatccgaatttgactcttctctgaaattatcgcattagatctca |
33771365 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 33771419 - 33771498
Alignment:
| Q |
245 |
ccatttacccgaatgttatctactaccaatgcaatttccctcatcttccgctcccgtgcttctgccggagaccccacctc |
324 |
Q |
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| T |
33771419 |
ccatttacccgaatgttatctactaccaatgcaatttccctcatcttccgctcccgtgcttctgccggagaccccacctc |
33771498 |
T |
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