View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_4 (Length: 647)
Name: NF17811_low_4
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 34674711 - 34674421
Alignment:
| Q |
1 |
tccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagtttgtgggtcctcccacttataaaatgttcggcctctannnnnnnnaaaca |
100 |
Q |
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| T |
34674711 |
tccacattgaattaaaagcaaccacacaaatgaaccggacactaatgagttcgtgggtcctcccacttataaaatgttcagcctctattttttttaaaca |
34674612 |
T |
|
| Q |
101 |
atgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttgcacatgtctgtgtcaaggtcccgataaaatgaataaaatcatc |
200 |
Q |
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| T |
34674611 |
atgtagaacttctaactcatttcacatttaccgtaatagaatttcttcaactatttacacatgtctgtgtcaaggttccgataaaatgaataaaatcatc |
34674512 |
T |
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| Q |
201 |
gcattaaacttagcaaccataaaagtagtttagacactatatcaatgcttaagttgctgccgtcaaaaatagtagcaacaatatatattcc |
291 |
Q |
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| T |
34674511 |
gcattaaacttagcaaccataaaagtagtttagacactatatcaatgcttaagttgctgccgtaaaaaatagtagcaacaatatatattcc |
34674421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 342 - 632
Target Start/End: Complemental strand, 34674370 - 34674082
Alignment:
| Q |
342 |
ctatttctctcctaaaaatcacataggtttgtagaaaatgtaaatttgcaaaacttccaatgagttattggatgtaatttcttttctaaggtatacnnnn |
441 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674370 |
ctatttctctcctaaacatcacataggtttgtagaaaatgtaaatttgcaaaacttccaatgagttattggatgtaatttcttttctaaggtatacaaaa |
34674271 |
T |
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| Q |
442 |
nnnnctatctctcatgtatcaatcattcatctgttgtctgtttcactccattgttcaaaaggtctacacnnnnnnnnnnnnnnnntgaaatcaaagtcta |
541 |
Q |
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| T |
34674270 |
aaaactatctctcatgtatcaatcattcatctgttgtctgtttcactccattgttcaaaaggtctacacaaaaataaaataaaaatgaaatcaaagtcta |
34674171 |
T |
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| Q |
542 |
atttgatcaatgcatgaaatgaaacagtgagttagacatagatagcatatgtggggaaaaataaaactaacaaaaacaccatacataggtg |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674170 |
atttgatcaatgcatgaaatgaaacagtgagttagacatagatagc--atgtggggaaaaataaaactaacaaaaacaccatacataggtg |
34674082 |
T |
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