View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_41 (Length: 299)
Name: NF17811_low_41
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 32809367 - 32809619
Alignment:
| Q |
18 |
taagggaatgagtgaaagaaaactggaaatg------agtgagagtttacaagtttgagatgtaagaagtggaataaataagtgaagtgggtgggttgtg |
111 |
Q |
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| T |
32809367 |
taagggaatgagtgaaagaaaactggaagtggaagtgagtgagaggtta--agtttgagatgtaagaagtggaataaataagtgaagtgggtgggttgtg |
32809464 |
T |
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| Q |
112 |
ttataataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcattatttatcaacaagatgattggtcc |
211 |
Q |
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| T |
32809465 |
tttaaataacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcactacttatcaacaagctgatttgtcc |
32809564 |
T |
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| Q |
212 |
aagtggtaaagggcatgaaccttttaaatatgtgatcaagatcgattcatgtatg |
266 |
Q |
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| T |
32809565 |
aagtggtaaaggacatgaaccttttaaatatgtaatcaagatcaattcaggtatg |
32809619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 32269306 - 32269506
Alignment:
| Q |
18 |
taagggaatgagtgaaagaaaactggaaatgagtgagagtttacaagtttgagatgtaagaagtggaataaataagtgaagtgggtgggttgtgttataa |
117 |
Q |
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| T |
32269306 |
taagggaatgagtgaaagaaaattggaagtgagtgcaaggttacaagtttgagatgaaagaagtggaatatataagtgaaatttatgggttttgtttaaa |
32269405 |
T |
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| Q |
118 |
taacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaagagtaaagaatgcattatttatcaacaagatgattggtccaagtgg |
217 |
Q |
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| T |
32269406 |
taacattgaatgtcaccaccaaacaaaataacattgaatgcataaaattaagaaagttaaagattgcattgcttaccaaca--atgattggtccaagtgg |
32269503 |
T |
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| Q |
218 |
taa |
220 |
Q |
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||| |
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| T |
32269504 |
taa |
32269506 |
T |
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