View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_44 (Length: 283)
Name: NF17811_low_44
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 46222737 - 46222644
Alignment:
| Q |
174 |
ataaaattctaatattaacaacgaacatattaatattgtcattttcctaaaaaagataatattaatattgctattaaaaaagtgtatacacaca |
267 |
Q |
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| T |
46222737 |
ataaaattctaatattaacaaccaacatattaatattgtcattttcctaaaaaagataatattaatattgctattaaaaaagtgtatacacaca |
46222644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 46222885 - 46222724
Alignment:
| Q |
1 |
actagacaaccttgacnnnnnnntcaaagaaattgtgagagatataaagtggtttggtggttggggcggaggtagttaagaagtagaaggataaaagagg |
100 |
Q |
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| T |
46222885 |
actagacaaccttgacaaaaaaatcaaagaaattgtgaaagatataaagtggtttggtggttggggcagaggtagttaagaagtagaaggataaaagagg |
46222786 |
T |
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| Q |
101 |
ttgtagattccttcnnnnnnnnnnnnnnttgtaggttcaaccccatcacaataaaattctaata |
164 |
Q |
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| T |
46222785 |
ttgtagattccttc--aacaaaaaaaaattgtaggttcaaccccatcacaataaaattctaata |
46222724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 46343665 - 46343586
Alignment:
| Q |
174 |
ataaaattctaatattaacaacgaacatattaatattgtcattttcctaaaaaagataatattaatattgctattaaaaa |
253 |
Q |
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| T |
46343665 |
ataaaattctaatattaacaaccaacatattaatattgtcattttcctaaaaaagaaaatattactattgccattaaaaa |
46343586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 46343756 - 46343682
Alignment:
| Q |
32 |
attgtgagagatataaagtggtttggtggttggggcggaggtagttaagaagtagaaggataaaagaggttgtag |
106 |
Q |
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| T |
46343756 |
attgtgagagatacaaagtggtttggtggttagggtggagggagttaagaagtagaacgataaaaaaggtcgtag |
46343682 |
T |
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