View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_46 (Length: 280)
Name: NF17811_low_46
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 86 - 256
Target Start/End: Original strand, 43300385 - 43300555
Alignment:
| Q |
86 |
aaatgagtggtataatatgggtataannnnnnnngcttgactaaacttttgtcgatagtgtatcatcataatttataatttatatacactagcgtatgct |
185 |
Q |
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| T |
43300385 |
aaatgagtgctataatatgggtataattttttttacttgagtaaacttttgtcgatagtgtatcatcataatttataatttatatacactagcgtatgct |
43300484 |
T |
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| Q |
186 |
aaacaaataaatccattttacactgcaaattttcatcgtgaaaacagactagtttccatggttaatgtctt |
256 |
Q |
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| T |
43300485 |
aaacaaataaatccattttacactgcaaattttcatcgtgaaaacagactagttttcatggttaatgtctt |
43300555 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 43300264 - 43300341
Alignment:
| Q |
11 |
aatatggagaagtaagtatgttggatttaaaaggtgctgacgcaacaaaagttgttcttgttattggaatctacaaaa |
88 |
Q |
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| T |
43300264 |
aatatggagaagtaagtatgttggatttaaaaggtgctgatgcaacaaaagttgttcttgttattggaatctacaaaa |
43300341 |
T |
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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 27647218 - 27647287
Alignment:
| Q |
11 |
aatatggagaagtaagtatgttggatttaaaaggtgctgacgcaacaaaagttgttcttgttattggaat |
80 |
Q |
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| T |
27647218 |
aatatggagaagtgagtatgttggatttaaaaggtgctgatgcaacaaaagttgttcttgttattggaat |
27647287 |
T |
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