View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_low_48 (Length: 275)
Name: NF17811_low_48
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_48 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 31593712 - 31593786
Alignment:
| Q |
201 |
tacaaacaccatctaaccgagtgctaccaataaaaccaaagtcaacacctaagtcaaatttaaaccccacatttt |
275 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
31593712 |
tacaaacactatgtaaccgagtgctaccaataaaaccaaagtcaacacctaaatcaaatttaaacctcatatttt |
31593786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31593663 - 31593713
Alignment:
| Q |
1 |
tgtatgttaaaaattgtggttgattgtgtagttgagttaaaagcaatttta |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31593663 |
tgtatgttaaaaattgtggttgattgtgtagttgagttaaaagcaatttta |
31593713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 259
Target Start/End: Original strand, 930622 - 930723
Alignment:
| Q |
157 |
gtatatagatggaacactcaaaagaaaacccataaaattatcaatacaaacaccatctaaccgagtgctaccaataaaaccaaagtcaacacctaagtca |
256 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||| | ||||| | | |||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
930622 |
gtatataggcggaacacccaaaagaaaatttataaaatca-caatatagataccatctaactcagtgctaccaccaaaaccaaagtcaacacctaagtca |
930720 |
T |
|
| Q |
257 |
aat |
259 |
Q |
| |
|
||| |
|
|
| T |
930721 |
aat |
930723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 3015624 - 3015787
Alignment:
| Q |
84 |
gcaaaatttattaatcaagtccctgcacaaaatgatcagggatcaacaataaaaattataaagtaaagacgttgtatatagatggaacactcaaaagaaa |
183 |
Q |
| |
|
|||||||||||||| ||| | ||||||||| | | || ||| |||||| |||||||| ||| |||||||| |||||| ||||||||| |||| ||| |
|
|
| T |
3015624 |
gcaaaatttattaaccaaattcctgcacaagacaaacaaggaccaacaacaaaaattacaaattaaagacgacttatataaatggaacacaaaaaaaaaa |
3015723 |
T |
|
| Q |
184 |
acccataaaattatcaatacaaacaccatctaaccgagtgctaccaataaaaccaaagtcaacac |
248 |
Q |
| |
|
|| ||||||| | |||| ||||||| ||||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
3015724 |
actcataaaaacactaatataaacaccttctaatcgagtgcta-caccaaaaccaaaatcaacac |
3015787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University