View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_59 (Length: 247)
Name: NF17811_low_59
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 1501990 - 1502207
Alignment:
| Q |
15 |
agaacaagaatgggtacacgttcaccgaaggaacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatc |
114 |
Q |
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| T |
1501990 |
agaacaagaatgggtacacgttcaccgaaggaacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatc |
1502089 |
T |
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| Q |
115 |
ttcataatgctgtcaagaatctctcagctgaactttatgcaaaagatgttcattttcttatggagcttattcaagtatagttaccttctgtttcacctct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1502090 |
ttcataatgctgtcaagaatctctcagctgaactttatgcaaaagatgttcattttcttatggagcttattcaagtatagttaccttctgtttcacctct |
1502189 |
T |
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| Q |
215 |
ttcttatgttataacatg |
232 |
Q |
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|||||||||||||||||| |
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| T |
1502190 |
ttcttatgttataacatg |
1502207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 28029486 - 28029340
Alignment:
| Q |
45 |
gaacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctg |
144 |
Q |
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| T |
28029486 |
gaacacgttgaagagatacgaaggacaaagttctctattggtggaaatcctaatcctttgactgaggatcttcatcatgccgttaagaatctctccgccg |
28029387 |
T |
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| Q |
145 |
aactttatgcaaaagatgttcattttcttatggagcttattcaagta |
191 |
Q |
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| T |
28029386 |
agctttatgcaaaagatgttcatttcctgatggaactgattcaagta |
28029340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 3008041 - 3008195
Alignment:
| Q |
37 |
caccgaaggaacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatct |
136 |
Q |
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||||||| ||||||||| |||| |||||||| |||||| |||||||| ||| ||||||||| |||||| | ||||| ||| |||| ||||||||||| |
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| T |
3008041 |
caccgaaagaacacattgaagagatacgaagagaaaagttttctattggtgggaaacctaatccattgacttatgatctccatcatgcagtcaagaatct |
3008140 |
T |
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| Q |
137 |
ctcagctgaactttatgcaaaagatgttcattttcttatggagcttattcaagta |
191 |
Q |
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| T |
3008141 |
ctctgccgagctttacgccaaagatgttcattttctcatggaactcattcaagta |
3008195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 37800222 - 37800095
Alignment:
| Q |
64 |
gaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctgaactttatgcaaaagatgt |
163 |
Q |
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|||||||||| ||||||||||| ||| | ||||||| ||||||| ||||||| ||| | ||||| ||||||||||| ||||| ||||||||||| ||||| |
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| T |
37800222 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttatgcaaaggatgt |
37800123 |
T |
|
| Q |
164 |
tcattttcttatggagcttattcaagta |
191 |
Q |
| |
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||||| || |||||||| || |||||| |
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| T |
37800122 |
ccatttcctaatggagctcatacaagta |
37800095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 2925624 - 2925476
Alignment:
| Q |
42 |
aaggaacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcag |
141 |
Q |
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||||||||||| |||| |||||||| | |||||| || ||||| ||| ||||||||| |||||| | ||||||||| |||||||||| ||||||| | |
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| T |
2925624 |
aaggaacacatagaagagatacgaagaaaaaagtt-tccattggtgggaaacctaatccattgactgaagatcttcatcatgctgtcaaaaatctctttg |
2925526 |
T |
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| Q |
142 |
ctgaactttatgcaaaagatgttcattttcttatggagcttattcaagta |
191 |
Q |
| |
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| T |
2925525 |
cggaactttacgccaaagatgttcacttcctcatggaactcattcaagta |
2925476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 2935455 - 2935314
Alignment:
| Q |
46 |
aacacattcaagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctga |
145 |
Q |
| |
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|||||||| |||| |||||||||| ||||||||| ||||| || | || || | ||||||| |||| ||||| | ||||||||||||||||||| ||| |
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| T |
2935455 |
aacacattgaagagatacgaaggaaaaagttctccattggtggcaatccaaaccctttgactgaggaccttcaccaagctgtcaagaatctctcagatga |
2935356 |
T |
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| Q |
146 |
actttatgcaaaagatgttcattttcttatggagcttattca |
187 |
Q |
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| T |
2935355 |
actatataccagagatgttcatttcctaatggagctcattca |
2935314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 4911584 - 4911681
Alignment:
| Q |
55 |
aagatatacgaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctgaactttat |
152 |
Q |
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|||| |||||||||| ||| ||||||||||| ||| |||| || | ||||| | | ||||||||| | ||||| ||||||||||| |||||||||||| |
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| T |
4911584 |
aagagatacgaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctctctgctgaactttat |
4911681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 32695395 - 32695337
Alignment:
| Q |
111 |
gatcttcataatgctgtcaagaatctctcagctgaactttatgcaaaagatgttcattt |
169 |
Q |
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||||||||| |||||||||| ||||||| |||||||||||||| |||||| ||||||| |
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| T |
32695395 |
gatcttcatcatgctgtcaaatatctctccgctgaactttatgctaaagatattcattt |
32695337 |
T |
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