View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_6 (Length: 623)
Name: NF17811_low_6
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_6 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 22 - 618
Target Start/End: Original strand, 46286736 - 46287333
Alignment:
| Q |
22 |
aatttaatttcaaaatctttaaattt-agatatggtagatacctaaaaaatgataaaatgagatttaaagccaaaacggcaaacaaagggcaaataggag |
120 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46286736 |
aatttaatttcaaaatctttaaattttagatatggtaaatacctaaaaaatgataaaatgagatttaaagccaaaacggcaaacaaagggcaaataggag |
46286835 |
T |
|
| Q |
121 |
gaagaagattaatgggtaaaggaatttggtatcaatagttttaggattttaatgtcgagggttgggtattgtgtttgagactatcaaggagttcttttgc |
220 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46286836 |
gaagaagattaatgggtaaaggaatttggtatcgatagttttaggattttaatgtcgagggttgggtattgtgtttgagactatcaaggagttcttttgc |
46286935 |
T |
|
| Q |
221 |
cacgagaacatcccgggctccaaaccggatatacacaaatgaaggtgtgaagttgttgctctcttacaagatattcatgggatgctttctagagagtaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46286936 |
cacgagaacatcccgggctccaaaccggatatacacaaataaaggtgtgaagttgttgctctcttacaagatattcatgggatgctttctagagagtaga |
46287035 |
T |
|
| Q |
321 |
ggtgaagagaaagcttgtgtttgaggctagactgtcaacaagttgttcatgccattcatagcaacactgaactttactgagtatgagttaattattgatt |
420 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46287036 |
ggtgaagagaaagtttgtgtttgaggctagactgtcaacaagttgttcatgccattcatagcaacactgaacttcactgagtatgagttaattattgatt |
46287135 |
T |
|
| Q |
421 |
cttgtaagaagctttcttgaaaaaatattagttgctttgtggtttatgttcagagacgaacgaatagaatcgcttacacttgcaaggacgtctatttctt |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||||| |
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| T |
46287136 |
cttgtaagaagctttcttgaaaaaatattagttgctttgtggtttatgttcagagacaagcgaatagagtagcttacacttgcaaggacgtctatttctt |
46287235 |
T |
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| Q |
521 |
ctgctagtccccatatttttaaacagatgcctataatgccgggtcagttacttatcaataagatgacttgaatttgttttgattcaaataaagcgcac |
618 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46287236 |
ctgccagtccccatatttttaaacagatgcctataatgccgggtcagttacttatcaataagatgaattgaatttgttttgattcaaataaagcgcac |
46287333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 10567573 - 10567522
Alignment:
| Q |
14 |
attctgaaaatttaatttcaaaatctttaaa-tttagatatggtagatacct |
64 |
Q |
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| T |
10567573 |
attctgaaaatttaatttcaaaatctttaaattttagatatggtagatacct |
10567522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 10568347 - 10568394
Alignment:
| Q |
18 |
tgaaaatttaatttcaaaatctttaaa-tttagatatggtagatacct |
64 |
Q |
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| T |
10568347 |
tgaaaatttaatttcaaaatctttaaattttagatatggtagatacct |
10568394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 20425 - 20392
Alignment:
| Q |
14 |
attctgaaaatttaatttcaaaatctttaaattt |
47 |
Q |
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| T |
20425 |
attctgaaaatttaatttcaaaatctttaaattt |
20392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 17229015 - 17229048
Alignment:
| Q |
14 |
attctgaaaatttaatttcaaaatctttaaattt |
47 |
Q |
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| T |
17229015 |
attctgaaaatttaatttcaaaatctttaaattt |
17229048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 19849318 - 19849351
Alignment:
| Q |
14 |
attctgaaaatttaatttcaaaatctttaaattt |
47 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19849318 |
attctgaaaatttaatttcaaaatctttaaattt |
19849351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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