View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17811_low_61 (Length: 245)

Name: NF17811_low_61
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17811_low_61
NF17811_low_61
[»] chr8 (2 HSPs)
chr8 (145-217)||(5662770-5662842)
chr8 (15-72)||(5662913-5662970)
[»] chr7 (2 HSPs)
chr7 (15-68)||(11649352-11649405)
chr7 (145-193)||(11649475-11649523)
[»] scaffold0003 (2 HSPs)
scaffold0003 (149-213)||(36796-36860)
scaffold0003 (145-211)||(42974-43041)
[»] chr3 (5 HSPs)
chr3 (145-213)||(31688072-31688140)
chr3 (145-213)||(31896727-31896795)
chr3 (145-213)||(31912436-31912504)
chr3 (145-198)||(31946084-31946137)
chr3 (15-44)||(52131183-52131212)
[»] chr6 (1 HSPs)
chr6 (145-211)||(27444320-27444387)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 5662842 - 5662770
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662842 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgttt 5662770  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 5662970 - 5662913
Alignment:
Q  15 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtgtgcg 72  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5662970 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcg 5662913  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 11649352 - 11649405
Alignment:
Q  15 gagaggaagaagtggaagaatcacgatttatagagaaagggggagtggacggtg 68  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11649352 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg 11649405  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 11649475 - 11649523
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtatt 193  Q
    |||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  11649475 ttaggtcaaagccatggtttccaatgagatggatatgcaacattgtatt 11649523  T

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Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 36796 - 36860
Alignment:
Q  149 gtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaatt 213  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||| | |||||||||||    
T  36796 gtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataacattaatt 36860  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 42974 - 43041
Alignment:
Q  145 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaa 211  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | |||||||||    
T  42974 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaa 43041  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 31688140 - 31688072
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaatt 213  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||| | |||||||||||    
T  31688140 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaatt 31688072  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 31896727 - 31896795
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaatt 213  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | |||||||||||    
T  31896727 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaatt 31896795  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 31912436 - 31912504
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaatt 213  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | |||||||||||    
T  31912436 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaatt 31912504  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 31946084 - 31946137
Alignment:
Q  145 ttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaa 198  Q
    ||||||||||||||| |||  |||| |||||||||||||||||| |||||||||    
T  31946084 ttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaa 31946137  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 52131212 - 52131183
Alignment:
Q  15 gagaggaagaagtggaagaatcacgattta 44  Q
    ||||||||||||||||||||||||||||||    
T  52131212 gagaggaagaagtggaagaatcacgattta 52131183  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 27444387 - 27444320
Alignment:
Q  145 ttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacattaa 211  Q
    ||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | |||||||||    
T  27444387 ttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacattaa 27444320  T

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