View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_66 (Length: 239)
Name: NF17811_low_66
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_66 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 34675026 - 34674794
Alignment:
| Q |
7 |
tggacatcatctcttgatccgaaattttaagataatagatttatggacatttcacttgtaaattgttcaacctctacttttttaagaaatatgtgaattc |
106 |
Q |
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| T |
34675026 |
tggacatcacatcttgatccaaaattttaagataatagatttatggacatttcacttgtaaattgttcaacctctacttttttaagaaatatgtgaattc |
34674927 |
T |
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| Q |
107 |
ttactcacctcacacttgccacaacaatctatgctctcaagtacgagtgatttccattcactatactccccttcaagtgtaagctttttcatccacacac |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674926 |
ttactcacctcacacttgccacaacaatctccactctcaagtacgagtgatttccattcactatactccccttcaagtgtaagctttttcatccacacac |
34674827 |
T |
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| Q |
207 |
acttacttgcactgccattggttctctttcaac |
239 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34674826 |
acttacttgcactgccattggttctctttcaac |
34674794 |
T |
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