View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_68 (Length: 238)
Name: NF17811_low_68
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 31593403 - 31593614
Alignment:
| Q |
17 |
acgtgcaatacaaaaatcctagaaagtgcttctaaatcacatagtacctgtagagcaaaatcatcttcccacgtctagtgtgtttcctaaatttgaattc |
116 |
Q |
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| T |
31593403 |
acgtgcaatacaaaaatcctagaaaatgcttctaaatcacatagtacctgtagagcaaaatcatcttcccacgtttagtgt--ttcctaaatttgaattc |
31593500 |
T |
|
| Q |
117 |
tgacatttcaaaaccaaacatgtagcccataaacatttctttacgccacttcctcccaaagcgtaaaagaaggaggagtatgtaacaaaaacacacccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31593501 |
tgacatttcaaaaccaaacatgtagcccataaacatttctttacgccacttcctcccaaagcgtaaaagaaggaggagtatgtaacaaaaacacacccac |
31593600 |
T |
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| Q |
217 |
ttgttagtacaaaa |
230 |
Q |
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|||||||||||||| |
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| T |
31593601 |
ttgttagtacaaaa |
31593614 |
T |
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