View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17811_low_69 (Length: 237)

Name: NF17811_low_69
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17811_low_69
NF17811_low_69
[»] chr3 (11 HSPs)
chr3 (1-225)||(8876026-8876230)
chr3 (178-225)||(12700293-12700340)
chr3 (178-223)||(47614307-47614352)
chr3 (179-226)||(11670503-11670550)
chr3 (178-225)||(47615511-47615558)
chr3 (178-223)||(12703434-12703479)
chr3 (178-225)||(34019079-34019126)
chr3 (178-223)||(8593080-8593125)
chr3 (178-225)||(17776785-17776832)
chr3 (178-225)||(19078086-19078133)
chr3 (178-226)||(6249727-6249775)
[»] scaffold0320 (1 HSPs)
scaffold0320 (178-225)||(19608-19655)
[»] chr2 (6 HSPs)
chr2 (178-225)||(13030409-13030456)
chr2 (178-226)||(18869096-18869144)
chr2 (178-226)||(18905922-18905970)
chr2 (178-226)||(21837158-21837206)
chr2 (178-226)||(22848310-22848358)
chr2 (178-222)||(28618044-28618088)
[»] chr4 (2 HSPs)
chr4 (178-226)||(12129742-12129790)
chr4 (178-225)||(8155857-8155904)
[»] chr1 (11 HSPs)
chr1 (178-226)||(36613838-36613886)
chr1 (181-225)||(43059943-43059987)
chr1 (178-224)||(25652835-25652881)
chr1 (178-226)||(37526812-37526860)
chr1 (178-225)||(39221434-39221481)
chr1 (178-225)||(50680451-50680498)
chr1 (178-225)||(36612972-36613019)
chr1 (178-226)||(50681542-50681590)
chr1 (178-225)||(23980409-23980456)
chr1 (194-224)||(39222423-39222453)
chr1 (195-224)||(7674596-7674625)
[»] chr8 (9 HSPs)
chr8 (178-225)||(1824012-1824059)
chr8 (178-225)||(1858457-1858504)
chr8 (178-225)||(10006464-10006511)
chr8 (178-225)||(10007697-10007744)
chr8 (179-224)||(1823674-1823719)
chr8 (179-224)||(1858119-1858164)
chr8 (195-225)||(11456729-11456759)
chr8 (178-225)||(5514213-5514261)
chr8 (193-225)||(23169940-23169972)
[»] chr6 (3 HSPs)
chr6 (178-225)||(7314999-7315046)
chr6 (178-225)||(7316228-7316275)
chr6 (176-226)||(17496917-17496967)
[»] chr5 (7 HSPs)
chr5 (178-225)||(18486836-18486883)
chr5 (178-225)||(19753031-19753078)
chr5 (178-223)||(18485267-18485312)
chr5 (178-225)||(25524032-25524079)
chr5 (178-224)||(19754064-19754110)
chr5 (178-226)||(2686335-2686383)
chr5 (178-226)||(25523188-25523236)
[»] chr7 (9 HSPs)
chr7 (178-225)||(7500574-7500621)
chr7 (178-225)||(7501786-7501833)
chr7 (178-225)||(18371544-18371591)
chr7 (178-225)||(47369901-47369948)
chr7 (178-225)||(22629606-22629653)
chr7 (177-226)||(6618326-6618375)
chr7 (178-225)||(22630386-22630433)
chr7 (178-225)||(46482717-46482764)
chr7 (178-222)||(6620375-6620419)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8876230 - 8876026
Alignment:
Q  1 aagatgcttaacattgaacttcttttcaccaattctcttcctataaattgccccttcaatgcacatacgggtaaaacgggaaccttattgaacctggatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  8876230 aagatgcttaacattgaacttcttttcaccaattctcttcctataaattgccccttcaatgcacatacgggtaaaacgagaaccttattgaacctgaatc 8876131  T
Q  101 atgaagtccttgtacaattagtatccatagaaaccaaaggttcctcctctttggagcaggttcctcctcttcctataaattacacatgtggcctgccacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||                    |||||||||||| |||||||||||||||||||||    
T  8876130 atgaagtccttgtacaattagtatccatagaaaccaaaggtacctc--------------------ctcttcctataacttacacatgtggcctgccacg 8876051  T
Q  201 taggcgttgaataagtcaaaattga 225  Q
    |||||||||||||||||||||||||    
T  8876050 taggcgttgaataagtcaaaattga 8876026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 12700340 - 12700293
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12700340 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 12700293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 47614352 - 47614307
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaatt 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  47614352 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaatt 47614307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 11670550 - 11670503
Alignment:
Q  179 attacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11670550 attacacacgtggcctgccacgtaagcgttgaataagtcaaaattgat 11670503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 47615511 - 47615558
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  47615511 aattacacacgtggcctgccacgtaggcattgaataagtcaaaattga 47615558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 12703434 - 12703479
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaatt 223  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||    
T  12703434 aattacacacgtggtctgccacgtaggcgttgaataagtcaaaatt 12703479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 34019079 - 34019126
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  34019079 aattacacacgtggcctgtcacgtaggcgttgaataaatcaaaattga 34019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 8593080 - 8593125
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaatt 223  Q
    ||||||||| |||| ||||||| |||||||||||||||||||||||    
T  8593080 aattacacacgtggtctgccacataggcgttgaataagtcaaaatt 8593125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 17776785 - 17776832
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  17776785 aattacactcgtggtctgccacataggcgttgaataagtcaaaattga 17776832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 19078086 - 19078133
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  19078086 aattacactcgtggtctgccacataggcgttgaataagtcaaaattga 19078133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 6249775 - 6249727
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||| |||||| ||||||||||| |||||| || ||||||||||||    
T  6249775 aattacagatgtggtctgccacgtagacgttgactaggtcaaaattgat 6249727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 19655 - 19608
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19655 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 19608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 13030456 - 13030409
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13030456 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 13030409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 18869096 - 18869144
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  18869096 aattacacacgtggcctgccacataggcgttgaataagtcaaaattgat 18869144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 18905922 - 18905970
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  18905922 aattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgat 18905970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 21837206 - 21837158
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21837206 aattacacatgtggtctgccatgtaggcgttgaataagtcaaaattgat 21837158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 22848358 - 22848310
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22848358 aattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgat 22848310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 28618088 - 28618044
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaat 222  Q
    ||||||||| |||| ||||||||||||| |||||| |||||||||    
T  28618088 aattacacacgtggtctgccacgtaggcattgaattagtcaaaat 28618044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 12129790 - 12129742
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12129790 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgat 12129742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 8155904 - 8155857
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  8155904 aattacacacgtggcctgctacgtaggcgttgaataagtcaaagttga 8155857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 36613838 - 36613886
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36613838 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgat 36613886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 43059943 - 43059987
Alignment:
Q  181 tacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43059943 tacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 43059987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 25652881 - 25652835
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattg 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  25652881 aattacacatatggcctgccacgtaggcgttgaataagtcaaaattg 25652835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 37526812 - 37526860
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  37526812 aattacacacgtggcctaccacgtaggcgttgaataagtcaaaattgat 37526860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 39221481 - 39221434
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  39221481 aattacacacgtggcctgccacgtaggcgttgaattagtcaaaattga 39221434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 50680498 - 50680451
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  50680498 aattacacacgtggcctgctacgtaggcgttgaataagtcaaaattga 50680451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 36613019 - 36612972
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  36613019 aattacacacgtggcctgccacgtaagcgttgaataagttaaaattga 36612972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 50681542 - 50681590
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||||||  |||||||||| ||||||||||||||| |||||||||||    
T  50681542 aattacacacatggcctgccatgtaggcgttgaataaatcaaaattgat 50681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 23980409 - 23980456
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||| |||| ||||||||||||||||| ||||||||||    
T  23980409 aattacacacgtggtctgctacgtaggcgttgaataattcaaaattga 23980456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 39222423 - 39222453
Alignment:
Q  194 tgccacgtaggcgttgaataagtcaaaattg 224  Q
    |||||||||||||||||||||||||||||||    
T  39222423 tgccacgtaggcgttgaataagtcaaaattg 39222453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 7674625 - 7674596
Alignment:
Q  195 gccacgtaggcgttgaataagtcaaaattg 224  Q
    ||||||||||||||||||||||||||||||    
T  7674625 gccacgtaggcgttgaataagtcaaaattg 7674596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 1824012 - 1824059
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1824012 aattacacatgtggcctaccacgtaggcgttgaataagtcaaaattga 1824059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 1858457 - 1858504
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1858457 aattacacatgtggcctaccacgtaggcgttgaataagtcaaaattga 1858504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 10006511 - 10006464
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10006511 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 10006464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 10007697 - 10007744
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10007697 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 10007744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 1823719 - 1823674
Alignment:
Q  179 attacacatgtggcctgccacgtaggcgttgaataagtcaaaattg 224  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||    
T  1823719 attacacacatggcctgccacgtaggcgttgaataaatcaaaattg 1823674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 1858164 - 1858119
Alignment:
Q  179 attacacatgtggcctgccacgtaggcgttgaataagtcaaaattg 224  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||    
T  1858164 attacacacatggcctgccacgtaggcgttgaataaatcaaaattg 1858119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 11456759 - 11456729
Alignment:
Q  195 gccacgtaggcgttgaataagtcaaaattga 225  Q
    |||||||||||||||||||||||||||||||    
T  11456759 gccacgtaggcgttgaataagtcaaaattga 11456729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 5514213 - 5514261
Alignment:
Q  178 aattacacatgtggcctgcc-acgtaggcgttgaataagtcaaaattga 225  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||||||||    
T  5514213 aattagacacgtggcctgcccacgtaggcattgaataagtcaaaattga 5514261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 23169940 - 23169972
Alignment:
Q  193 ctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||||||| |||||||||||||||||||    
T  23169940 ctgccacgtaggcattgaataagtcaaaattga 23169972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 7315046 - 7314999
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7315046 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 7314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 7316228 - 7316275
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  7316228 aattacacacgtggcttgccacgtaggcgttgaataagtcaaaattga 7316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 17496967 - 17496917
Alignment:
Q  176 taaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||| ||||||||||| | || |||||||||||||||||||||||||||    
T  17496967 taaatttcacatgtggccagtcatgtaggcgttgaataagtcaaaattgat 17496917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 18486836 - 18486883
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18486836 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 18486883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 19753078 - 19753031
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19753078 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaattga 19753031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 18485312 - 18485267
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaatt 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  18485312 aattacacacgtggcctgccacgtaggcgttgaataagtcaaaatt 18485267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 25524032 - 25524079
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  25524032 aattacacacgtggtctgccacgtaggcgttgaataagtcaaaattga 25524079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 19754064 - 19754110
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattg 224  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  19754064 aattacacacgtggccttccacgtaggcgttgaataagtcaaaattg 19754110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 2686335 - 2686383
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||||||  |||||||  |||||||||||||||||||||||||||||    
T  2686335 aattacacacatggcctgatacgtaggcgttgaataagtcaaaattgat 2686383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 25523236 - 25523188
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    ||||||||| |||||  |||||||||||||||||||| |||||||||||    
T  25523236 aattacacacgtggcaggccacgtaggcgttgaataaatcaaaattgat 25523188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 7500621 - 7500574
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  7500621 aattacacacatggcctgccacgtaggcgttgaataagtcaaaattga 7500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 7501786 - 7501833
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  7501786 aattacacacgtggcctgccacgtaggcattgaataagtcaaaattga 7501833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 18371591 - 18371544
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  18371591 aattatacacgtggcctgccacgtaggcgttgaataagtcaaaattga 18371544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 47369948 - 47369901
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  47369948 aattacacacgtggcctgccacataggcgttgaataagtcaaaattga 47369901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 22629653 - 22629606
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||    
T  22629653 aattacacacgtggcaggccacgtaggcgttgaataagtcaaaattga 22629606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 6618375 - 6618326
Alignment:
Q  177 aaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgat 226  Q
    |||||||||||||||| |||||| |||||||||| || ||||||||||||    
T  6618375 aaattacacatgtggcatgccacataggcgttgactaggtcaaaattgat 6618326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 22630386 - 22630433
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    ||||||||| ||||||| |||| || ||||||||||||||||||||||    
T  22630386 aattacacacgtggcctaccacataagcgttgaataagtcaaaattga 22630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 46482764 - 46482717
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaattga 225  Q
    |||||||||  |||| |||||||||||| |||||||||||||||||||    
T  46482764 aattacacacatggcttgccacgtaggcattgaataagtcaaaattga 46482717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 6620375 - 6620419
Alignment:
Q  178 aattacacatgtggcctgccacgtaggcgttgaataagtcaaaat 222  Q
    ||||||||||||||| |||||| |||||||||| || ||||||||    
T  6620375 aattacacatgtggcatgccacataggcgttgattaggtcaaaat 6620419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University