View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_low_7 (Length: 601)
Name: NF17811_low_7
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 12 - 588
Target Start/End: Complemental strand, 398076 - 397500
Alignment:
| Q |
12 |
gagcacagaacacatagatgacaaggtcaagagcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacattcaagttattcggaatcca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
398076 |
gagcacagaacacatagatgacaaggtcaagggcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacatttaagttattcggaatcca |
397977 |
T |
|
| Q |
112 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaactt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
397976 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacatagtttccaagagaaattgatgccatacaaagtgaactt |
397877 |
T |
|
| Q |
212 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397876 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
397777 |
T |
|
| Q |
312 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397776 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
397677 |
T |
|
| Q |
412 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397676 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
397577 |
T |
|
| Q |
512 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgtt |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
397576 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgtt |
397500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 588
Target Start/End: Original strand, 3802708 - 3803284
Alignment:
| Q |
12 |
gagcacagaacacatagatgacaaggtcaagagcacttagcgctgcaatgaggtagaaaaacctgtccatgtgcccaacattcaagttattcggaatcca |
111 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
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|
| T |
3802708 |
gagcacagaacacgtagacgacaaggttaagagcacttaacgctgcgatgaggtagaaaaaccaatccatgtgcccatcattcaagttattcggtatcca |
3802807 |
T |
|
| Q |
112 |
tccaggttcctcgcctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaactt |
211 |
Q |
| |
|
||| |||| |||||| ||| ||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
3802808 |
tcccagttcttcgcctttagtagtgattttcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaactt |
3802907 |
T |
|
| Q |
212 |
ccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaa |
311 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3802908 |
ccaaagctttttatgccatccggggcttgaccattgaagaactccaactgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaa |
3803007 |
T |
|
| Q |
312 |
tttgacagaatatactcaaattactttgtttctgtccaggctgaacttgtttaagcctttcaaactccgttacaccagctgcaaccatcgcaagcattcc |
411 |
Q |
| |
|
||||| |||||||||||||| ||| |||| | | |||| ||| |||||||||| | ||||||| ||| |||||||||| ||||| |||| |||||| |
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|
| T |
3803008 |
tttgatagaatatactcaaagaactagccttctcttccggcttaacatgtttaagccgtacaaactctgttgcaccagctgcgaccattgcaaacattcc |
3803107 |
T |
|
| Q |
412 |
aataactaggccaactcccattctttgaagttcgcttaaccccttaggattaccgcttaattttccggccaagggaactagaacttggcgataaagtcca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3803108 |
gataactaggccaactcccattctttgaagttcacttaaccccttaggattaccgcttaattttccggccaagggaacaagaacttggcgataaagtcca |
3803207 |
T |
|
| Q |
512 |
gtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaattttcctaccttgttgtt |
588 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||| |
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|
| T |
3803208 |
gtacatacaaggacactacctatatcaaacacagacatggttgcagctggtaagtgaaactttcgtaccttgttgtt |
3803284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 2745903 - 2745785
Alignment:
| Q |
167 |
ctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgaccca |
266 |
Q |
| |
|
|||||||| ||||| | || ||||| | ||||||||||| ||||||||||||||| | ||||||||||| || |||||| |||||||| ||||| | |
|
|
| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaactccaattgaccaa |
2745804 |
T |
|
| Q |
267 |
catacataaaaacttctga |
285 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
2745803 |
catacatgaaaacttctga |
2745785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 160 - 329
Target Start/End: Original strand, 52809497 - 52809666
Alignment:
| Q |
160 |
catgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaac |
259 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||| |
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|
| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
52809596 |
T |
|
| Q |
260 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatatactca |
329 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
52809597 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
52809666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 52809847 - 52809909
Alignment:
| Q |
510 |
cagtgcatacaaggacactgcatatatcaaacacagacatggttgctgctggcaagtgaaatt |
572 |
Q |
| |
|
|||||||||| || ||||| || || ||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
52809847 |
cagtgcatactagcacactacagatgtcaaacacagacatgctggctgctggcaaatgaaatt |
52809909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 321
Target Start/End: Original strand, 4708319 - 4708470
Alignment:
| Q |
170 |
acataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacat |
269 |
Q |
| |
|
||||| || ||||| ||||| |||| ||| ||||||| |||||| || || |||| ||||||||||| |||| ||||||||||||| ||||| || |||| |
|
|
| T |
4708319 |
acatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgccctacat |
4708418 |
T |
|
| Q |
270 |
acataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaa |
321 |
Q |
| |
|
||||||| || || ||||| || | ||| ||||||| || ||||| ||||| |
|
|
| T |
4708419 |
acataaacacctcagaagctcctataagtgcatactgagggatttgccagaa |
4708470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 40744239 - 40744112
Alignment:
| Q |
200 |
caaagtgaacttccaaagctttttatgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaa |
299 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||| |||| ||||||| || || || || || |||||||||||||| || ||||| || | ||| |
|
|
| T |
40744239 |
caaagtgcacttccaaagctctttaatccatcaggtgtttgagcattgaaaaattctaattgtcctacatacataaaaacctcagaagctcctataagtg |
40744140 |
T |
|
| Q |
300 |
catactgtggaatttgacagaatatact |
327 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |
|
|
| T |
40744139 |
catactgaggaatttgccagaagatact |
40744112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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