View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17811_low_70 (Length: 237)
Name: NF17811_low_70
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_70 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41140881 - 41140660
Alignment:
| Q |
1 |
taatagaacctaattgctaatcatctaatcattgaagtccaatacaaatcgatactttaaatgtcaaccctgattcattaattttagcttccaatcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
41140881 |
taatagaacctaattgctaatcatctaatcattgaagtccaatacaaatagatactttaaatgtcaactctgattcattagttttagcttccaatcttct |
41140782 |
T |
|
| Q |
101 |
attatctccattgacacactcatcttgagcagaagaatctattacaacacaggtctcaagttctt-cttattaaacgaattacttgaaccttaacttcta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41140781 |
attatctccattgacacactcatcttgagcagaagaatctattacaacacaggtctcaagttcttccttattaaacgaattacttgaaccttaacttcta |
41140682 |
T |
|
| Q |
200 |
aagttatctactttagctcttc |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41140681 |
aagttatctactttagctcttc |
41140660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 35907688 - 35907593
Alignment:
| Q |
68 |
ccctgattcattaattttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctc |
157 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35907688 |
ccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctc |
35907593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 35915298 - 35915196
Alignment:
| Q |
69 |
cctgattcattaattttagcttccaatcttctattatct---ccattg--acacactcatcttgagcagaagaatctattacaacacaggtctcaagttc |
163 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||| |||||| | ||||||| | ||||||| ||||||||||| | |||||||||||||| | |
|
|
| T |
35915298 |
cctggttcattagttttagcttccaattttctattatctccaccattgccaaacactcaacctgagcaggagaatctattatatcacaggtctcaagtgc |
35915199 |
T |
|
| Q |
164 |
ttc |
166 |
Q |
| |
|
||| |
|
|
| T |
35915198 |
ttc |
35915196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 33911081 - 33910986
Alignment:
| Q |
68 |
ccctgattcattaattttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctc |
157 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
33911081 |
ccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaatacaggtctc |
33910986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University