View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_72 (Length: 233)
Name: NF17811_low_72
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 1932551 - 1932761
Alignment:
| Q |
23 |
cccaccaatcctgttacaacaatgaaagt-----ctgcttcacaagtctgttgtccagtataatggcaaccttcattcttacgttggcttggttctgtac |
117 |
Q |
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| T |
1932551 |
cccaccaatcctgttacaacaatgaaattaaaatctgcttcacaagtctgttgtccagtataatggcaaccttcattcttacgttggcttggttctatat |
1932650 |
T |
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| Q |
118 |
gtatcttttgtcttcacttccatattgtttttatatgttatagaaataatcttttgctttcgacatttgctaaagataatgatgtccaaaactatatttc |
217 |
Q |
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| T |
1932651 |
gcatcttttgtcttcacttccatattgtttttatatgttatagaaataatcttttgctttcgacatttgctaaagataatgatgtccaaaactatatttc |
1932750 |
T |
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| Q |
218 |
cttttaaaaat |
228 |
Q |
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||||||||||| |
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| T |
1932751 |
cttttaaaaat |
1932761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 17500460 - 17500571
Alignment:
| Q |
102 |
tggcttggttctgtacgtatcttttgtcttcacttccatattgtttttatatgttatagaaataatcttttgctttcgacatttgctaaagataatgatg |
201 |
Q |
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| T |
17500460 |
tggcttggttctatatgcatcttttgtcttcacttccatattgtttttatatgttttagaaataatcttttgctatcgacatttgctaaagataatgatg |
17500559 |
T |
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| Q |
202 |
tccaaaactata |
213 |
Q |
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||| |||||||| |
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| T |
17500560 |
tccgaaactata |
17500571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 17552754 - 17552643
Alignment:
| Q |
102 |
tggcttggttctgtacgtatcttttgtcttcacttccatattgtttttatatgttatagaaataatcttttgctttcgacatttgctaaagataatgatg |
201 |
Q |
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|||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17552754 |
tggcttggttctatatgcatcttttgtcttcacttccatattgtttttatatgttttagaaataatcttttgctatcgacatttgctaaagataatgatg |
17552655 |
T |
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| Q |
202 |
tccaaaactata |
213 |
Q |
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||| |||||||| |
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| T |
17552654 |
tccgaaactata |
17552643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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