View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_73 (Length: 226)
Name: NF17811_low_73
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_73 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 28469388 - 28469550
Alignment:
| Q |
51 |
acatatgcatcattgttttgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
150 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28469388 |
acatgtgcatcattgttttgtgataattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaag |
28469487 |
T |
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| Q |
151 |
taacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
213 |
Q |
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| T |
28469488 |
taacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
28469550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 34734346 - 34734184
Alignment:
| Q |
51 |
acatatgcatcattgttttgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
150 |
Q |
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| T |
34734346 |
acatgtgcatcattgttttgtgataattttcaagagttcttgaagaaatccatggttagagtgtgtagagggacaaagcttatgcaaaccgtccaaaaag |
34734247 |
T |
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| Q |
151 |
taacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
213 |
Q |
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| T |
34734246 |
taacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
34734184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 75651 - 75490
Alignment:
| Q |
51 |
acatatgcatcattgttttgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
150 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75651 |
acatgtgcatcattgttttgtgataattttcaagagttcttgaagaaatccatggt-agagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
75553 |
T |
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| Q |
151 |
taacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
213 |
Q |
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| T |
75552 |
taacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
75490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 24966330 - 24966169
Alignment:
| Q |
51 |
acatatgcatcattgttttgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
150 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966330 |
acatgtgcatcattgttttgtgataattttcaagagttcttgaagaaatccatggt-agagtgtgtagagggagaaagcttatgcaaaccgtccaaaaag |
24966232 |
T |
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| Q |
151 |
taacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
213 |
Q |
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| T |
24966231 |
taacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
24966169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 29317811 - 29317723
Alignment:
| Q |
51 |
acatatgcatcattgttttgtgataattttcaagagttcctgaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
139 |
Q |
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| T |
29317811 |
acatgtgcatcattgttttgtgataactttcaagagttcctaaagaaatccatggttagagtgtgtagagggagaaagcttatgcaaac |
29317723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 29315611 - 29315533
Alignment:
| Q |
135 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaatagacatctctcgtgattggacctttgcttct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
29315611 |
caaaccgtccaaaaagtaacattttggtcatattaccccaatttcaaaagacatctctcgtgattggaccttttcttct |
29315533 |
T |
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