View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17811_low_8 (Length: 570)
Name: NF17811_low_8
Description: NF17811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17811_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 34063634 - 34063947
Alignment:
| Q |
14 |
cacagatgaggtatggtctaaacattaatctgaccaaaattttaggacagtttacacttcaagaaaatagttgttttaacagggaaaattgtgagtggca |
113 |
Q |
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| T |
34063634 |
cacatatgaggtatggtctaaacattaatctgaccaaaattttaggacagtttacacttcaagaaaagagttgttttaacatggaaaattgtgagtggca |
34063733 |
T |
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| Q |
114 |
taaacccctaaaatatattgtgctttttcgaagggtaaatccctcagataccccagggatttcacaggggtttatccctcgctaaaattatgaaccccta |
213 |
Q |
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| T |
34063734 |
taaaccc-taaaaaatattgtgctttttcgaagggaaaatccctcagataccccagggttttcacacgggtttattcctcgctaaaattatgaaccccta |
34063832 |
T |
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| Q |
214 |
acaaatgattaggtagaaaacaataatctattaaattttgaatttagctgtcacaccttctagtcaatgagtcattcatctctgaaggcaatgcttgaag |
313 |
Q |
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| T |
34063833 |
acaaatgattaggtagaaattagtaatctattaaattttgaatttatctgtcacaccttccgatcaatgagtcattcatctctaaaggcaatgcttgaag |
34063932 |
T |
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| Q |
314 |
acaatagtaattcta |
328 |
Q |
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| T |
34063933 |
acaatagtaattcta |
34063947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 427 - 555
Target Start/End: Original strand, 34064048 - 34064179
Alignment:
| Q |
427 |
ttgttgatgatgatttattattttaatatggttttct---tattggaaaatagacaacaatggcacccaacccaaggacaatagtaagagtcgtcttcat |
523 |
Q |
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| T |
34064048 |
ttgttgatgatgatttattattttaatatggttttcttcttattggaaaatagacaacaatggcacccaacccaaggacaatagtaagagtcgtctccat |
34064147 |
T |
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| Q |
524 |
aaggttattgctcaagtactaacctcgttcac |
555 |
Q |
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| T |
34064148 |
aaggttattgctcaagtactaacctcgttcac |
34064179 |
T |
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